Sequence
atgc intronic sequence ATGC exonic sequenceTGGGAGGAAGAAACAGGAAAGTTGCAGAGGCTTTTGCAAGGAATGGAGGGAAAAGgttactctatgatagatatttctggtgcccaaaacttattccaagtatagcccagaggcccattgtttgtaaccttggtgattcttacatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0219g00280.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA05G24070.1 (Glycine max), 5'ss of exon 12
TGGGAGGAAGAAACAGGAAAGTTGCAGAGGCTTTTGCAAGGAATGGAGGGAAAAGgttactctatgatagatatttctggtgcccaaaacttattccaagtatagcccagag-gccca--ttgtttgtaaccttggtgattcttacatgcag
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TGGGTGGAAGAAACAGGAAAGTTGCTGAGGCTTATGCAAGGAATGGAGGGAAGAGgttgttttgt-----atttctcttttgtccatattttctagggtgaggaaatgaaaatgtctgatttagttatatatttcctaattttc---tgcag
upper sequence: Vv14s0219g00280.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA19G07410.1 (Glycine max), 5'ss of exon 9
TGGGAGGAAGAAACAGGAAAGTTGCAGAGGCTTTTGCAAGGAATGGAGGGAAAAGgttactctatgatagatatttctggtgcccaaaacttattccaagtatagcccagaggccca--ttgtttgtaaccttggtgattcttacatgcag
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TGGGTGGAAGAAATAGGAAAGTTGCTGAGGCTTATGCAAGGAATGGAGGGAAGAGgttgttttgt-atttctttctcttttgttcatatttctagggagaggaaacgaaaatgtctgatttagttatatatttcctaattttc---tgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122690719|gb|EC956681.1|EC956681EST: GGAAGAAACAGGAAAGTTGCAGAGGCTTTTGCAAGGAATGGAGGGAAAAG GTCTTTTGATGAGCTTGAAGCAGAGATGTTGCAAGGTCAGAAGCTACAG
genomic: GGAAGAAACAGGAAAGTTGCAGAGGCTTTTGCAAGGAATGGAGGGAAAAGgttactctat ... ttacatgcagGTCTTTTGATGAGCTTGAAGCAGAGATGTTGCAAGGTCAGAAGCTACAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGGAGGAAGAAACAGGAAAGTTGCAGAGGCTTTTGCAAGGAATGGAGGGAAAAGgttactctatgatagatatttctggtgcccaaaacttattccaagtatagcccagaggcccattgtttgtaaccttggtgattcttacatgcag
- - GGAAGA
- - - AAGAAA
- - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - TGGAGG