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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTATCCGTGATATTATTCAAAATCATCTACTGCAAgtaagaccatgttattaagtgttttaacagtactgtcagcatttgcattgaattgtttattttttttttaatctgttggaataattattttttactgaag...

Basic information

species Vitis vinifera
transcript Vv14s0171g00490.t01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30299156|gb|CB975950.1|CB975950
EST:     AATTATCCGTGATATTATTCAAAATCATCTACTGCGA                         GTCCTTTGCCTGGTTGCCATGGAGAAGCCCGTTTCTCTCAAACCTGAGCAC
genomic: AATTATCCGTGATATTATTCAAAATCATCTACTGCAAgtaagaccat ... ctgcttacagGTCCTTTGCCTGGTTGCCATGGAGAAGCCCGTCTCTCTCAAACCTGAGCAC
EST: gi|351015046|gb|FQ444335.1|FQ444335
EST:     CAAAATCATCTACTGCAA                         GTCCTTTGCCTGGTTGCCATGGAGAAACCCGTTTCTCTCAAACCTGAGCAC
genomic: CAAAATCATCTACTGCAAgtaagaccat ... ctgcttacagGTCCTTTGCCTGGTTGCCATGGAGAAGCCCGTCTCTCTCAAACCTGAGCAC
EST: gi|294967142|gb|GW840017.1|GW840017
EST:     AATTATCCGTGATATTATTCAAAATCATCTACTGCAA                         GTCCTTTGCCTGGTTGCCATGGAGAAGCCCGTCTCTCTCAAACCTGAGCAC
genomic: AATTATCCGTGATATTATTCAAAATCATCTACTGCAAgtaagaccat ... ctgcttacagGTCCTTTGCCTGGTTGCCATGGAGAAGCCCGTCTCTCTCAAACCTGAGCAC
EST: gi|110696408|gb|EE072500.1|EE072500
EST:     AATTATCCGTGATATTATTCAAAATCATCTACTGCAA                         GTCCTTTGCCTGGTTGCCATGGAGAAGCCCGTTTCTCTCAAACCTGAGCAC
genomic: AATTATCCGTGATATTATTCAAAATCATCTACTGCAAgtaagaccat ... ctgcttacagGTCCTTTGCCTGGTTGCCATGGAGAAGCCCGTCTCTCTCAAACCTGAGCAC
EST: gi|110364929|gb|EC928538.1|EC928538
EST:     AATTATCCGTGATATTATTCAAAATCATCTACTGCAA                         GTCCTTTGCCTGGTTGCCATGGAGAAGCCCGTTTCTCTCAAACCTG
genomic: AATTATCCGTGATATTATTCAAAATCATCTACTGCAAgtaagaccat ... ctgcttacagGTCCTTTGCCTGGTTGCCATGGAGAAGCCCGTCTCTCTCAAACCTG
EST: gi|56409520|gb|CX017772.1|CX017772
EST:     AATTATCCGTGATATTATTCAAAATCATCTACTGCAA                         GTCCTTTGCCTGGTTGCCATGGAGAAGCCCGTCTCTCTCAAACCTGAGCAC
genomic: AATTATCCGTGATATTATTCAAAATCATCTACTGCAAgtaagaccat ... ctgcttacagGTCCTTTGCCTGGTTGCCATGGAGAAGCCCGTCTCTCTCAAACCTGAGCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATTATCCGTGATATTATTCAAAATCATCTACTGCAAgtaagaccatgttattaagtgttttaacagtactgtcagcatttgcattgaattgtttattttttttttaatctgttggaataattattttttactgaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaataa