Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGATCAATTTTCCGTCCTGAGTTCATGAACCGAGTTGATGAGTACATAGTTTTCCAGCCTCTGGACCGTGATCAGATAAGCAGTATTGTCAAGTTACAGgtaagttgctctacactgttgtttgattgcttaaaaatgattttttcatgaatatatatatttgcatttaaacttgtttttctgatgggatggggatcaa...

Basic information

species Vitis vinifera
transcript Vv14s0108g01500.t01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32248570|gb|CD714389.1|CD714389
EST:     TTTTCCAGCCTCTGGACCGTGATCAGATAAGCAGTATTGTCAAGTTACAG                         TTGGAACGGGTACAATTGAGAATAGCAGACCGGAAGATGAAACTCCAGGTG
genomic: TTTTCCAGCCTCTGGACCGTGATCAGATAAGCAGTATTGTCAAGTTACAGgtaagttgct ... tgttttccagTTGGAACGGGTACAGTTGAGACTAGCAGACCGGAAGATGAAACTCCAGGTG
EST: gi|33403044|gb|CF208671.1|CF208671
EST:     TTTTCCAGCCTCTGGACCGTGATCAGATAAGCAGTATTGTCAAGTTACAG                         TTGGAACGGGTACAGTTGAGACTAGCAGACCGGAAGATGAAACTCCAGGTG
genomic: TTTTCCAGCCTCTGGACCGTGATCAGATAAGCAGTATTGTCAAGTTACAGgtaagttgct ... tgttttccagTTGGAACGGGTACAGTTGAGACTAGCAGACCGGAAGATGAAACTCCAGGTG
EST: gi|32247106|gb|CD712925.1|CD712925
EST:     TTTTCCAGCCTCTGGACCGTGATCAGATAAGCAGTATTGTCAAGTTACAG                         TTGGAACGGGTACAATTGAGAATAGCAGACCGGAAGATGAAACTCCAGGTG
genomic: TTTTCCAGCCTCTGGACCGTGATCAGATAAGCAGTATTGTCAAGTTACAGgtaagttgct ... tgttttccagTTGGAACGGGTACAGTTGAGACTAGCAGACCGGAAGATGAAACTCCAGGTG
EST: gi|27581345|gb|CB004040.1|CB004040
EST:     TTTTCCAGCCTCTGGACCGTGATCAGATAAGCAGTATTGTCAAGTTACAG                         TTGGAACGGGTACAATTGAGAATAGCAGACCGGAAGATGAAACTCCAGGTG
genomic: TTTTCCAGCCTCTGGACCGTGATCAGATAAGCAGTATTGTCAAGTTACAGgtaagttgct ... tgttttccagTTGGAACGGGTACAGTTGAGACTAGCAGACCGGAAGATGAAACTCCAGGTG
EST: gi|83275161|gb|DV939257.1|DV939257
EST:     TTTTCCAGCCTCTGGACCGTGATCAGATAAGCAGTATTGTCAAGTTACAG                         TTGGAACGGGTACAGTTGAGACTAGCAGACCGGAAGATGAAACTCCAGGTG
genomic: TTTTCCAGCCTCTGGACCGTGATCAGATAAGCAGTATTGTCAAGTTACAGgtaagttgct ... tgttttccagTTGGAACGGGTACAGTTGAGACTAGCAGACCGGAAGATGAAACTCCAGGTG
EST: gi|30323383|gb|CD006645.1|CD006645
EST:     TTTTCCAGCCTCTGGACCGTGATCAGATAAGCAGTATTGTCAAGTTACAG                         TTGGAACGGGTACAATTGAGAATAGCAGACCGGAAGATGAAACTCCAGGTG
genomic: TTTTCCAGCCTCTGGACCGTGATCAGATAAGCAGTATTGTCAAGTTACAGgtaagttgct ... tgttttccagTTGGAACGGGTACAGTTGAGACTAGCAGACCGGAAGATGAAACTCCAGGTG
EST: gi|110362109|gb|EC925620.1|EC925620
EST:     TTTTCCAGCCTCTGGACCGTGATCAGATAAGCAGTATTGTCAAGTTACAG                         TTGGAACGGGTACAGTTGAGACTAGCAGACCGGAAGATGAAACTCCAGGTG
genomic: TTTTCCAGCCTCTGGACCGTGATCAGATAAGCAGTATTGTCAAGTTACAGgtaagttgct ... tgttttccagTTGGAACGGGTACAGTTGAGACTAGCAGACCGGAAGATGAAACTCCAGGTG
EST: gi|71883391|gb|DT032446.1|DT032446
EST:     TTTTCCAGCCTCTGGACCGTGATCAGATAAGCAGTATTGTCAAGTTACAG                         TTGGAACGGGTACAGTTGAGACTAGCAGACCGGAAGATGAAACTCCAGGTG
genomic: TTTTCCAGCCTCTGGACCGTGATCAGATAAGCAGTATTGTCAAGTTACAGgtaagttgct ... tgttttccagTTGGAACGGGTACAGTTGAGACTAGCAGACCGGAAGATGAAACTCCAGGTG
EST: gi|33402957|gb|CF208584.1|CF208584
EST:     TTTTCCAGCCTCTGGACCGTGATCAGATAAGCAGTATTGTCAAGTTACAG                         TTGGAACGGGTACAGTTGAGACTAGCAGACCGGAAGATGAAACTCCAGGTG
genomic: TTTTCCAGCCTCTGGACCGTGATCAGATAAGCAGTATTGTCAAGTTACAGgtaagttgct ... tgttttccagTTGGAACGGGTACAGTTGAGACTAGCAGACCGGAAGATGAAACTCCAGGTG
EST: gi|32246792|gb|CD712611.1|CD712611
EST:     TTTTCCAGCCTCTGGCCCGTGATCAGATAAGCAGTATTGTCAAGTTACAG                         TTGGAACGGGTACAATTGAGAATAGCAGACCGGAAGATGAAACTCCAGGTG
genomic: TTTTCCAGCCTCTGGACCGTGATCAGATAAGCAGTATTGTCAAGTTACAGgtaagttgct ... tgttttccagTTGGAACGGGTACAGTTGAGACTAGCAGACCGGAAGATGAAACTCCAGGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGATCAATTTTCCGTCCTGAGTTCATGAACCGAGTTGATGAGTACATAGTTTTCCAGCCTCTGGACCGTGATCAGATAAGCAGTATTGTCAAGTTACAGgtaagttgctctacactgttgtttgattgcttaaaaatgattttttcatgaatatatatatttgcatttaaacttgtttttctgatgggatggggatcaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaatg