1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTGAAATGCGTCTATTATCCAGGCTTGCCAAGTCACCCTGAACATCATATTGCCAAGCGACAGATGACTGGTTTTGGTGGAGTAGTCAGTTTTGAGgtaagcatttgtaaccattttcatgtgctggtgtgaggttgttcatctggaagttggattttaagtgcttattgctatttaaatttgcag
species | Vitis vinifera |
transcript | Vv14s0108g01110.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATATTGCCAAGCGACAGATGACTGGTTTTGGTGGAGTAGCCAGTTTTGAG GTTGATGGAGACTTAACCACCACCATCAAGTTTGTTGATGCATTGAAAATCEST: gi|110731786|gb|EE106500.1|EE106500
genomic: ATATTGCCAAGCGACAGATGACTGGTTTTGGTGGAGTAGTCAGTTTTGAGgtaagcattt ... aaatttgcagGTTGATGGAGACTTAACCACCACCATCAAGTTTGTTGATGCATTGAAAATC
EST: ATATTGCCAAGCGACAGATGACTGGTTTTGGTGGAGTAGTCAGTTTTGAG GTTGATGGAGACTTAACTACCACCATCAAGTTTGTTGATGCATTGAAAATCEST: gi|110702814|gb|EE079112.1|EE079112
genomic: ATATTGCCAAGCGACAGATGACTGGTTTTGGTGGAGTAGTCAGTTTTGAGgtaagcattt ... aaatttgcagGTTGATGGAGACTTAACCACCACCATCAAGTTTGTTGATGCATTGAAAATC
EST: ATATTGCCAAGCGACAGATGACTGGTTTTGGTGGAGTAGTCAGTTTTGAG GTTGATGGAGACTTAACTACCACCATCAAGTTTGTTGATGCATTGAAAATC
genomic: ATATTGCCAAGCGACAGATGACTGGTTTTGGTGGAGTAGTCAGTTTTGAGgtaagcattt ... aaatttgcagGTTGATGGAGACTTAACCACCACCATCAAGTTTGTTGATGCATTGAAAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAAATGCGTCTATTATCCAGGCTTGCCAAGTCACCCTGAACATCATATTGCCAAGCGACAGATGACTGGTTTTGGTGGAGTAGTCAGTTTTGAGgtaagcatttgtaaccattttcatgtgctggtgtgaggttgttcatctggaagttggattttaagtgcttattgctatttaaatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG