1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCCCCTGCTCATCTTTATGCAACTTCAATGTCACCACCAGCTGTGCAACAAATTATCTCTGCTATAAAGGTTATTCTTGGAGAGGATGGTTCTTGTAGAGgtaggataaataaatcttctgtcatgcttggttttaacttctattcttgaatctttaggtttcagactctccattgctttaattgtttttgattttagtgctcttgtgtccatgtag
species | Vitis vinifera |
transcript | Vv14s0068g01300.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGGTTATTCTTGGAGAGGATGGTTCTTGTAGAG GAGCCCAAAAACTTGCACAAATACGTGAGAATAGCAACTTTTTCAGGTCAGEST: gi|329112275|gb|JG391743.1|JG391743
genomic: AGGTTATTCTTGGAGAGGATGGTTCTTGTAGAGgtaggataaa ... gtccatgtagGAGCCCAAAAACTTGCACAAATACGTGAGAATAGCAACTTTTTCAGGTCAG
EST: AATTATCTCTGCTATAAAGGTTATTCTTGGAGAGGATGGTTCTTGTAGAG GAGCCCAAAAACTTGCACAAATACGTGAGAATAGCAACTTTTTCAGGTCAGEST: gi|352789616|gb|FQ476214.1|FQ476214
genomic: AATTATCTCTGCTATAAAGGTTATTCTTGGAGAGGATGGTTCTTGTAGAGgtaggataaa ... gtccatgtagGAGCCCAAAAACTTGCACAAATACGTGAGAATAGCAACTTTTTCAGGTCAG
EST: GTTATTCTGGGAGGGGATGGTTCATGTAGAG GAGCCCAAAAACTTGCACAAATACGTGAGAATAGCAACTTTTTCAGGTCAG
genomic: GTTATTCTTGGAGAGGATGGTTCTTGTAGAGgtaggataaa ... gtccatgtagGAGCCCAAAAACTTGCACAAATACGTGAGAATAGCAACTTTTTCAGGTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCCCTGCTCATCTTTATGCAACTTCAATGTCACCACCAGCTGTGCAACAAATTATCTCTGCTATAAAGGTTATTCTTGGAGAGGATGGTTCTTGTAGAGgtaggataaataaatcttctgtcatgcttggttttaacttctattcttgaatctttaggtttcagactctccattgctttaattgtttttgattttagtgctcttgtgtccatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG