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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTCAGCTCCTGGATGCATTTTTGTGCTGTACGTGTCTTTGCAGAGAGTATCCTTAGATATGGCTTGCCACCATCCTTCTTGgtaaataaaccattcaactccaacattccttcttggaatccctccctcacgaattttcttttattgattgaggattggttgttgagatgatttcag

Basic information

species Vitis vinifera
transcript Vv14s0068g01280.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g01280.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os05g51530.1 (Oryza sativa), 5'ss of exon 9
GTTTTCAGCTCCTGGATGCATTTTTGTGCTGTACGTGTCTTTGCAGAGAGTATCCTTAGATATGGCTTGCCACCATCCTTCTTGgtaaataaaccattcaactccaacattccttcttggaatccctccctcacgaattttcttttattgattgaggattggttgttgag-atgatttcag---
|| ||||| ||||||||||| || |||||||| |||||||||| |||||| || |||||||||||  | || ||||| ||| ||||||     | |||| |||   || |    | |   | ||        ||     ||   |   ||||  |  ||    || ||   ||| |||||    
GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATTCTTAGATATGGTCTTCCCCCATCATTCCTGgtaat----ctattctactgttacgtagtatatgatagtcaaatttgtac-----tttgatgcctgatctaatatcatatgctgtttatgttttcatcag

upper sequence: Vv14s0068g01280.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G128995_T01 (Zea mays), 5'ss of exon 9
GTTTTCAGCTCCTGGATGCATTTTTGTGCTGTACGTGTCTTTGCAGAGAGTATCCTTAGATATGGCTTGCCACCATCCTTCTTGgtaaataaaccattcaact-ccaacattccttcttggaatccctccctcacgaattttcttttattgattgaggattggttgttgagatgatttcag
|| ||||| ||||||||||| || |||||||| |||||||||| |||||| ||||||||||||||  | || ||||| ||| |||||| |     |  |   |    |   |  |   | | || | ||| |  |   | |  |  |||   |||   ||  |                  
GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgctgaggctgttgtttatgatggtaaatagtatacttccgtttcttgtctgatcatatgttttgcatatcag------------------

upper sequence: Vv14s0068g01280.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G144372_T01 (Zea mays), 5'ss of exon 9
GTTTTCAGCTCCTGGATGCATTTTTGTGCTGTACGTGTCTTTGCAGAGAGTATCCTTAGATATGGCTTGCCACCATCCTTCTTGgtaaataaaccattcaactccaacattccttcttggaatccctccctcacgaattttcttttattgattgaggattggttgttgagatgatttcag
|| ||||| ||||||||||| ||||||||||| ||||||||||  ||||| || |||||||||||  |||| ||||| ||| |||||| |           |||  | | |  || |||  ||  |            ||   ||| |||  |||  ||  ||| |||            
GTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTGgtaatt-----------ctctcagacttttttttgtgatggcaaatat-tatgcttcagtttcttgtctgatcatatgtt-ttgcatcag------

upper sequence: Vv14s0068g01280.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA19G27360.1 (Glycine max), 5'ss of exon 9
GTTTTCAGCTCCTGGATGCATTTTTGTGCTGTACGTGTCTTTGCAGAGAGTATCCTTAGATATGGCTTGCCACCATCCTTCTTGgtaaataaaccattcaactccaacattccttcttggaatccctccctcacgaattttcttttattgattgaggattggttgttgagatgatttcag
|||||||| ||||||||||| ||||||||||| ||| | ||||| ||||| || || ||||||||  |||| ||||||||||||||||   |  | |  ||   |||  |||  |||      ||||       | ||||||   || || |     | ||    ||| |   ||| |||
GTTTTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTTTATTTGCTGAGAGCATTCTGAGATATGGTCTGCCTCCATCCTTCTTGgtaatatactcttctaaaatcaaagttcagtctaatggcccctg------ggattttcaaatactgttc----actgaccattgggt--attccag

upper sequence: Vv14s0068g01280.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA16G05470.1 (Glycine max), 5'ss of exon 9
GTTTTCAGCTCCTGGATGCATTTTTGTGCTGTACGTGTCTTTGCAGAGAGTATCCTTAGATATGGCTTGCCACCATCCTTCTTGgtaaataaaccattcaactccaacattccttcttggaatccctccctcacgaattttcttttattgattgaggattggttgttgagatgatttcag
|||||||| ||||||||||| ||||||||||| ||| | ||||| ||||| || || ||||||||  |||||||||| ||||||||||   |  | |  ||   |||  | |  |||    | ||||       | ||||||    | ||||     | ||  | ||| |   ||| |||
GTTTTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTTTATTTGCTGAGAGCATTCTGAGATATGGTCTGCCACCATCTTTCTTGgtaatatactcttctaaaatcaaagtgcagtctaatgacccctg------ggattttcaaacactgatc----actgagtattgggt--attccag

upper sequence: Vv14s0068g01280.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA16G26220.1 (Glycine max), 5'ss of exon 9
GTTTTCAGCTCCTGGATGCATTTTTGTGCTGTACGTGTCTTTGCAGAGAGTATCCTTAGATATGGCTTGCCACCATCCTTCTTGgtaaataaaccattcaactccaaca--ttccttcttggaatccctccctcacgaattttcttttattgattgaggattggttgttgagatgatttcag
|||||||||||||||||||| |||||||| || ||||| ||| | ||||| || || ||||||||  | |||||||| ||||||||| ||| ||| |||   | |||||  || |  |||    |    |     ||||| || | | | | ||      ||| || ||| | | ||| |||
GTTTTCAGCTCCTGGATGCACTTTTGTGCAGTGCGTGTATTTACCGAGAGCATTCTGAGATATGGTCTTCCACCATCTTTCTTGgtagatatacccttctg-tacaacagctttcagcttcatcttttccttcttcgaatattttatcacttatcc----ttgattcttgtggtcattccag

upper sequence: Vv14s0068g01280.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA02G07260.1 (Glycine max), 5'ss of exon 9
GTTTTCAGCTCCTGGATGCATTTTTGTGCTGTACGTGTCTTTGCAGAGAGTATCCTTAGATATGGCTTGCCACCATCCTTCTTGgtaaataaaccattcaactccaacattccttcttggaatccctccctcacgaattttcttttattgattgaggattggttgttgagatgatttcag
|||||||||||||||||||| |||||||| || ||||| ||| | ||||| || || ||||||||  | |||||||| ||||||||| ||| |||  ||    | |    |    | |  | |   ||| |||   ||||| | |       |||   ||| || ||| | | ||| |||
GTTTTCAGCTCCTGGATGCACTTTTGTGCAGTGCGTGTATTTACTGAGAGCATTCTGAGATATGGTCTTCCACCATCTTTCTTGgtagatatacccatctgtacaatagctttcaccttcattttttccttcaaatattttatctc------tgacccttgattcttgtggtcattccag

upper sequence: Vv14s0068g01280.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G12840.1 (Arabidopsis thaliana), 5'ss of exon 9
GTTTTCAGCTCCTGGATGCATTTTTGTGCTGTACGTGTCTTTGCAGAGAGTATCCTTAGATATGGCTTGCCACCATCCTTCTTGgtaaataaaccattcaactccaacattccttcttggaatccctccctcacgaattttcttttattgattgaggattggttgttgagatgatttcag
||||||||||||||||||||||| |||||||| |||   || || ||||| ||  | ||||| || || || ||  | |||||||||||| |    | |||     |   |  ||    |||| ||||   |      | ||  |||   |      |||  ||  |    |  || |||
GTTTTCAGCTCCTGGATGCATTTCTGTGCTGTGCGTACATTCGCTGAGAGCATTATGAGATACGGTTTACCTCCGGCGTTCTTGgtaaattaggactccaagct--atgctattttagagaattcctctaccctactatctcccttaccaa------attactttctcttgtctttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|83276100|gb|DV940108.1|DV940108
EST:     GTGTCTTTGCAGAGAGTATCCTTAGATATGGCTTGCCACCATCCTTCTTG                         GCATGTGTGTTAGCTCCATCCGTTAAAAGTGAGAAGAAAGTGCAATCAATT
genomic: GTGTCTTTGCAGAGAGTATCCTTAGATATGGCTTGCCACCATCCTTCTTGgtaaataaac ... atgatttcagGCATGTGTGTTAGCTCCATCCGTTAAAAGTGAGAAGAAAGTGCGATCAATT
EST: gi|110364030|gb|EC927670.1|EC927670
EST:     GTGTCTTTGCAGAGAGTATCCTTAGATATGGCTTGCCACCATCCTTCTTG                         GCATGTGTGTTAGCTCCCTCCGTTAAAAGTGAGAAGAAAGTGCGATCAATT
genomic: GTGTCTTTGCAGAGAGTATCCTTAGATATGGCTTGCCACCATCCTTCTTGgtaaataaac ... atgatttcagGCATGTGTGTTAGCTCCATCCGTTAAAAGTGAGAAGAAAGTGCGATCAATT
EST: gi|45770351|gb|CN006203.1|CN006203
EST:     GTGT-TTTGCAGAGAGTATCCTTAGATATGGCTTGCCACCATCCTTCTTG                         GCATGTGTGTTAGCTCCATCCGTTAAAAGTGAGAAGAAAGTGCAATCAATT
genomic: GTGTCTTTGCAGAGAGTATCCTTAGATATGGCTTGCCACCATCCTTCTTGgtaaataaac ... atgatttcagGCATGTGTGTTAGCTCCATCCGTTAAAAGTGAGAAGAAAGTGCGATCAATT
EST: gi|349827680|gb|FQ422548.1|FQ422548
EST:     GTGTCTTTGCAGAGAGTATCCTTAGATATGGCTTGCCACCATCCTTCTTG                         GCATGTGTGTTAGCTCCATCCATTAAAAGTGAGAAGAAAGTGCGATCAATT
genomic: GTGTCTTTGCAGAGAGTATCCTTAGATATGGCTTGCCACCATCCTTCTTGgtaaataaac ... atgatttcagGCATGTGTGTTAGCTCCATCCGTTAAAAGTGAGAAGAAAGTGCGATCAATT
EST: gi|110688297|gb|EE066689.1|EE066689
EST:     GTGTCTTTGCAGAGAGTATCCTTAGATATGGCTTGCCACCATCCTTCTTG                         GCATGTATGTTAGCTCCATCCGTTAAAAGTGAGAAGAAAGTGCGATCAATT
genomic: GTGTCTTTGCAGAGAGTATCCTTAGATATGGCTTGCCACCATCCTTCTTGgtaaataaac ... atgatttcagGCATGTGTGTTAGCTCCATCCGTTAAAAGTGAGAAGAAAGTGCGATCAATT
EST: gi|351022393|gb|FQ445168.1|FQ445168
EST:     GTGTCTTTGCAGAGAGTATCCTTAGATATGGCTTGCCACCATCCTTCTTG                         GCATGTGTGTTAGCTCCATCCATTAAAAGTGAGAAGAAAGTGTGATCAATT
genomic: GTGTCTTTGCAGAGAGTATCCTTAGATATGGCTTGCCACCATCCTTCTTGgtaaataaac ... atgatttcagGCATGTGTGTTAGCTCCATCCGTTAAAAGTGAGAAGAAAGTGCGATCAATT
EST: gi|34362548|gb|CF404133.1|CF404133
EST:     CATCCTTCTTG                         GCATGTGTGTTAGCTCCATCCGTTAAAAGTGAGAAGAAAGTGCAATCAATT
genomic: CATCCTTCTTGgtaaataaac ... atgatttcagGCATGTGTGTTAGCTCCATCCGTTAAAAGTGAGAAGAAAGTGCGATCAATT
EST: gi|351013608|gb|FQ429749.1|FQ429749
EST:     GTGTCTTTGCAGAGAGTATCCTTAGATATGGCTTGCCACCATCCTTCTTG                         GCATGTGTGTTAGCTCCATCCGTTAAAAGTGAGAAGAAAGTGCGATCAATT
genomic: GTGTCTTTGCAGAGAGTATCCTTAGATATGGCTTGCCACCATCCTTCTTGgtaaataaac ... atgatttcagGCATGTGTGTTAGCTCCATCCGTTAAAAGTGAGAAGAAAGTGCGATCAATT