Sequence
atgc intronic sequence ATGC exonic sequenceAAACATAAGTTTGTCAACATATTGGATAATCCTGGGTCTGCTGATCTCAGTGCATATGTTGATTTTGCATCCATCAGGCATTCTGCTGAAGAAGCTTCAGgtgcatatccttaacttcttggttgtagtagtagcagaatctctctctctctctctctctctctctctctctctgacgttaataagcataaactctgaaagaggaatgaagattaattccataatattttgatgtttttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0066g02600.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os01g40620.2 (Oryza sativa), 5'ss of exon 9
AAACATAAGTTTGTCAACATATTGGATAATCCTGGGTCTGCTGATCTCAGTGCATATGTTGATTTTGCATCCATCAGGCATTCTGCTGAAGAAGCTTCAGgtgc------atatccttaa--cttcttggttgtagta---gtagcagaatctctctctctctctctctctctctctctctctctgacgttaataagcataaactctgaaagaggaatgaagattaattccataatattttgatgtttttacag
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AAGCACAAGTTTGTACACATATTGGATAACCCTGGTTCAGCCGATCTGAGTGCTTATGTTGATTTTGCATCAATCAGACACTCCGCTAAGGAAGCTTCAGgtttgcacagatatcttaaatcctttctgcttgtttttctcatgtccagacaaacatttcttactaggtctgtcttgaactttctgcag-----------------------------------------------------------------
upper sequence: Vv14s0066g02600.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA11G10540.1 (Glycine max), 5'ss of exon 9
AAACATAAGTTTGTCAACATATTGGATAATCCTGGGTCTGCTGATCTCAGTGCATATGTTGATTTTGCATCCATCAGGCATTCTGCTGAAGAAGCTTCAGgtgcatatccttaacttcttggttgtagtagtagcagaatctctctctctctctctctctctctctctctctctgacgttaataagcataaactctgaaagaggaa-tgaagattaattccataatattttgatgtttttacag------
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AAACACAAGTTTGTCAACCTTCTAGACAATCCTGGATCAGCAGATCTCAGTGCATATGTTGACTTTGCTTCCATTAGGCATTCCGCGGAGGAAGCTTCAGgtgcgtttgcaaa------tgcttgtagttgttacaaa----------------ctatatgttgattagaatcagacatcag-aagtatatatattaggtcagaaagcaaagattagttttcgactaatttaatgattatatatatgcag
upper sequence: Vv14s0066g02600.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT3G28700.1 (Arabidopsis thaliana), 5'ss of exon 9
AAACATAAGTTTGTCAACATATTGGATAATCCTGGGTCTGCTGATCTCAGTGCATATGTTGATTTTGCATCCATCAGGCATTCTGCTGAAGAAGCTTCAGgtgcatatccttaacttcttggttgtagtagtagcagaatctctctctctctctctctctctctctctctctctgacgttaataagcataaactctgaaagaggaatgaagattaattccataatattttgatgtttttacag
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AAACACAAGTTTGTCAACATACTAGATGATCCCGGGTCTGCCGATCTAAGTGCTTATGTCGACTTTCCTTCAATAAAACACTCCGCTGAGGAAGCTTCAGgtttcgttcctatactggctactagtcattgtgatgtaggtagggt-----------tagcttacttacttgacaaagcaaatgtgtgtg--ttctgcag-------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30255613|gb|CB971745.1|CB971745EST: TGCATATGTTGATTTTGCATCCATCAGGCATTCTGCTGAAGAAGCTTCAG ACGATGTGATTGTCCATGGGCCCATTACCCAGTCTCAGTTTCTTGGTTCTC
genomic: TGCATATGTTGATTTTGCATCCATCAGGCATTCTGCTGAAGAAGCTTCAGgtgcatatcc ... gtttttacagACGATGTGATTGTCCATGGGCCCATTACCCAGTCTCAGTTTCTTGGTTCTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAACATAAGTTTGTCAACATATTGGATAATCCTGGGTCTGCTGATCTCAGTGCATATGTTGATTTTGCATCCATCAGGCATTCTGCTGAAGAAGCTTCAGgtgcatatccttaacttcttggttgtagtagtagcagaatctctctctctctctctctctctctctctctctctgacgttaataagcataaactctgaaagaggaatgaagattaattccataatattttgatgtttttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC