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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAAGTTAGACGCCTGTATGACATAGCCAATGTGTTATCTTCCATGAACCTAATAGAGAAGgtaaaatatattcttgaaattctttgatggtgaatcagaggagcttgattaggaatcatccatcttttcttttctctaattagttatagttttgcag

Basic information

species Vitis vinifera
transcript Vv14s0066g02370.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g02370.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT5G14960.1 (Arabidopsis thaliana), 5'ss of exon 9
CAAAAGTTAGACGCCTGTATGACATAGCCAATGTGTTATCTTCCATGAACCTAATAGAGAAGgtaaaatatattcttgaaattctttgatggtgaatcagaggagcttgattaggaatcatccatcttttcttttctctaattagttatagttttgcag
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AGAAAGTTAGACGCCTTTACGACATTGCAAATGTGTTTTCCTCAATGAAGCTAATCGAGAAGgtacaat-tactatatgagcctgttcctaaaatattacaata------tgcacaatcttggatactcaaatctctctcatcttttgtgttcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110378733|gb|EC943880.1|EC943880
EST:     GCCTGTATGACATAGCCAATGTGTTATCTTCCATGAACCTAATAGAGAAG                         ACCCCTCACCCAGAGAGCAGAAAACCAGCATTTAGGTGGCTGGGAGTAAAA
genomic: GCCTGTATGACATAGCCAATGTGTTATCTTCCATGAACCTAATAGAGAAGgtaaaatata ... agttttgcagACCCCTCACCCAGAGAGCAGAAAACCAGCATTTAGGTGGCTGGGAGTAAAA