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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGAGCTTTGGAACTATCCAGTGTGGCTCCGGGACCTCATTCCACAAGACGTGGATGGCAGAAATAGGCCTGACCCCGTCGACCTTCCTTCTCTTGAAAgtaagtcaccatccattttctggggtgagtgaccaacatatgatatgagagattaacccatttgattgatgatgatgcag

Basic information

species Vitis vinifera
transcript Vv14s0066g01690.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g01690.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA19G01470.1 (Glycine max), 5'ss of exon 8
CTCGAGCTTTGGAACTATCCAGTGTGGCTCCGGGACCTCATTCCACAAGACGTGGATGGCAGAAATAGGCCTGACCCCGTCGACCTTCCTTCTCTTGAAAgtaagtcaccatccattttctggggtgagtgaccaacatatgatatgagagattaacccatttgattgatgatgatgcag----------------------
 | |||||||||||||| |||| ||||||| | |||||| | |||||| || | ||||||| | |||||||||| |  || || ||  || |||||||||||| || |   |     ||||    | | |    | ||     ||| |   | | |        |  ||| | || | ||                      
TTAGAGCTTTGGAACTACCCAGAGTGGCTCAGAGACCTCGTACCACAAAACATAGATGGCACAGATAGGCCTGATCATGTGGATCTAGCTGCTCTTGAAAgtatgttaaagttt-cattctaatctaa-tcttaatcactctttattattaaattatgtgcacaagggattaggaagtaggaactaatccaataatatgata