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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGTTGAGATCATGGCTACTGTGTTTTCTCGAAATGCATGGCGTTGTGTTTGGCATATGATTCAGgtttggggcattcttttttcatactgtagctattgacacttatccatttattcctatcaagggatacctctgaaattgttgccatgctacttgcag

Basic information

species Vitis vinifera
transcript Vv14s0066g00310.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g00310.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA19G08270.1 (Glycine max), 5'ss of exon 10
CTTTGTTGAGATCATGGCTACTGTGTTTTCTCGAAATGCATGGCGTTGTGTTTGGCATATGATTCAGgtttg---gggcattcttttttcatactgtagctattgacacttat-ccatttattcctatcaagggatacctctgaaattgttgccatgctactt-gcag
 |||||||||||||||||| |||| |||||  || |||||||||||||||| ||||| ||||| |||||||    | | | || ||||   |  | ||  | ||   | ||   |||   | | | ||  |   ||| ||      || ||  | ||| |||| ||||
ATTTGTTGAGATCATGGCTCCTGTATTTTCCAGAGATGCATGGCGTTGTGTGTGGCACATGATACAGgtttatatgaggactcattttgtgtcttctatttttttttattttcaccacacaattcgattcatatatatctaacttgttcttcacgtgccactttgcag

upper sequence: Vv14s0066g00310.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT3G27470.1 (Arabidopsis thaliana), 5'ss of exon 11
CTTTGTTGAGATCATGGCTACTGTGTTTTCTCGAAATGCATGGCGTTGTGTTTGGCATATGATTCAGgtttggggcattcttttttcatactgtagctattgacacttatccatttattcctatcaagggatacctctgaaattgttgccatgctacttgcag
 ||||| ||||| |||||| |||| || || || || |||||||| ||||| ||||||||||||||||| ||                || || | | |   |    ||| | | || |    | |     | ||     ||||||| || ||  ||| ||||
GTTTGTGGAGATTATGGCTCCTGTTTTCTCCCGCAAGGCATGGCGCTGTGTGTGGCATATGATTCAGgtatg----------------taatggaacca--aatttctattcttctactgtctttagcaatttcc-----aattgttaccttgtaact-gcag

upper sequence: Vv14s0066g00310.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: PP1S129_53V6.1 (Physcomitrella patens), 5'ss of exon 11
CTTTGTTGAGATCATGGCTACTGTGTTTTCTCGAAATGCATGGCGTTGTGTTTGGCATATGATTCAGgtttggggcattcttttttcatactgtagctattgacacttatccatt-tattcctatcaagggatacctctgaaattgttgc-catgctacttgcag---
 |||||||||||||||||| |||||||||| ||||| |||||||||||  | ||| | || || |||||      |  |    ||  ||  |||  |   |   ||| |  |     | |    | | |   | | ||| |  || ||   | || | || |      
ATTTGTTGAGATCATGGCTCCTGTGTTTTCACGAAAAGCATGGCGTTGCATCTGGTACATAATACAGgtacattactatgaccttcaatgatgtgtcctctttaactgagacggaacactggagtgaggattttcatctaattttattattcttgttcctggttacag

upper sequence: Vv14s0066g00310.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: PP1S448_20V6.3 (Physcomitrella patens), 5'ss of exon 11
CTTTGTTGAGATCATGGCTACTGTGTTTTCTCGAAATGCATGGCGTTGTGTTTGGCATATGATTCAGgtttggggcattcttttttcatactgtagctattgacacttatccatttattcctatcaagggatacctctgaaattgttgccatgctacttgcag-----------------
 |||||||||||||||||  | |||||||| ||||| ||||||||||| || ||| | || || |||||    |        |||  | | |    | |||     |    || |     | || | | ||| |     |  ||     |    || ||                     
GTTTGTTGAGATCATGGCACCCGTGTTTTCACGAAAAGCATGGCGTTGCGTCTGGTACATAATACAGgtacatgatcacaactttgaagaat----ccatttgatttacctcagtcgagaccatgaggagatgcagtatatgtttccatctaattattttatatctgtacttggttatag