1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTTTCACCTGAGGAATGGGACAAGAATGCCGGCATTCAAGTTGTTGATGGTATATAAGTTTCCAAgtaagtgcttattttgtcacaattaagtaaatttgccatctccttgtcttgccaattgcctcatggcccagtagagccttatgtggaaagggtaccagat...
species | Vitis vinifera |
transcript | Vv14s0060g02160.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TGGGACAAGAATGCCGGCATTCAAGTTGTTGATGGTATATAAGTTTCCAA AGGGTCGAAGTTCAGTCATTTGAAGAGCAACAGGATATCCTACAGAGAGTTEST: gi|110723416|gb|EE100702.1|EE100702
genomic: TGGGACAAGAATGCCGGCATTCAAGTTGTTGATGGTATATAAGTTTCCAAgtaagtgctt ... tctatgacagAGGGTCGAAGTTCAGTCATTTGAAGAGCAACAGGATATCCTACAGAGAGTT
EST: TGGGACAAGAATGCTGGCATTCAAGTTGTTGATGGTATATAAGTTTCCAA AGGGTTGAAGTTCAGTCATTTGAAGAGCAACAGGATATCCTACAGAGAGTTEST: gi|110375703|gb|EC940714.1|EC940714
genomic: TGGGACAAGAATGCCGGCATTCAAGTTGTTGATGGTATATAAGTTTCCAAgtaagtgctt ... tctatgacagAGGGTCGAAGTTCAGTCATTTGAAGAGCAACAGGATATCCTACAGAGAGTT
EST: TGGGACAAGAATGCTGGCATTCAAGTTGTTGATGGTATATAAGTTTCCAA AGGGTTGAAGTTCAGTCATTTGAAGAGCAACAGGATATCCTACAGAGAGTTEST: gi|110385484|gb|EC950016.1|EC950016
genomic: TGGGACAAGAATGCCGGCATTCAAGTTGTTGATGGTATATAAGTTTCCAAgtaagtgctt ... tctatgacagAGGGTCGAAGTTCAGTCATTTGAAGAGCAACAGGATATCCTACAGAGAGTT
EST: TGGGACAAGAATGCTGGCATTCAAGTTGTTGATGGTATATAAGTTTCCAA AGGGTTGAAGTTCAGTCATTTGAAGAGCAACAGGATATCCTACAGAGAGTTEST: gi|110383404|gb|EC947776.1|EC947776
genomic: TGGGACAAGAATGCCGGCATTCAAGTTGTTGATGGTATATAAGTTTCCAAgtaagtgctt ... tctatgacagAGGGTCGAAGTTCAGTCATTTGAAGAGCAACAGGATATCCTACAGAGAGTT
EST: TGGGACAAGAATGCCGGCATTCAAGTTGTTGATGGTATATAAGTTTCCAA AGGGTCGAAGTTCAGTCATTTGAAGAGCAACAGGATATCCTACAGAGAGTTEST: gi|110413624|gb|EC979419.1|EC979419
genomic: TGGGACAAGAATGCCGGCATTCAAGTTGTTGATGGTATATAAGTTTCCAAgtaagtgctt ... tctatgacagAGGGTCGAAGTTCAGTCATTTGAAGAGCAACAGGATATCCTACAGAGAGTT
EST: TGGGACAAGAATGCCGGCATTCAAGTTGTTGATGGTATATAAGTTTCCAA AGGGTCGAAGTTCAGTCATTTGAAGAGCAACAGGATATCCTACAGAGAGTTEST: gi|34545979|gb|CF514211.1|CF514211
genomic: TGGGACAAGAATGCCGGCATTCAAGTTGTTGATGGTATATAAGTTTCCAAgtaagtgctt ... tctatgacagAGGGTCGAAGTTCAGTCATTTGAAGAGCAACAGGATATCCTACAGAGAGTT
EST: TGGGACAAGAATGCCGGCATTCAAGTTGTTGATGGTATATAAGTTTCCAA AGGGTCGAAGTTCAGTCATTTGAAGAGCAACAGGATATCCTACAGAGAGTT
genomic: TGGGACAAGAATGCCGGCATTCAAGTTGTTGATGGTATATAAGTTTCCAAgtaagtgctt ... tctatgacagAGGGTCGAAGTTCAGTCATTTGAAGAGCAACAGGATATCCTACAGAGAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTTTCACCTGAGGAATGGGACAAGAATGCCGGCATTCAAGTTGTTGATGGTATATAAGTTTCCAAgtaagtgcttattttgtcacaattaagtaaatttgccatctccttgtcttgccaattgcctcatggcccagtagagccttatgtggaaagggtaccagat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggaaa