1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CCTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacattgtatttcagtacatcatgcaaaatatagctcgattgcattaaattaaatacatcttttctgagtggaattaccggatctaggtgggagg...
species | Vitis vinifera |
transcript | Vv14s0060g00600.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|71856504|gb|DT005559.1|DT005559
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCCATGAACCCCAACEST: gi|156737184|gb|EV241305.1|EV241305
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGC-ATGAACCCCAAC
EST: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|161714435|gb|FC064434.1|FC064434
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|34546808|gb|CF515040.1|CF515040
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|110700433|gb|EE078469.1|EE078469
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTCTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|110399980|gb|EC966516.1|EC966516
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: GGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|110712249|gb|EE089658.1|EE089658
genomic: GGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGTACTCCAACAAAGGAGGAAATTAAATGCATGAACCCCAACEST: gi|349828876|gb|FQ419209.1|FQ419209
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAAC
EST: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|30134321|gb|CB919659.1|CB919659
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|87584334|gb|DY473544.1|DY473544
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|110424518|gb|EC990881.1|EC990881
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|110367470|gb|EC931404.1|EC931404
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: GATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|110416992|gb|EC983012.1|EC983012
genomic: GATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|110423991|gb|EC990344.1|EC990344
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|30302437|gb|CB979231.1|CB979231
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|110424369|gb|EC990727.1|EC990727
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|34543640|gb|CF511872.1|CF511872
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|110371622|gb|EC935735.1|EC935735
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: GAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|30136122|gb|CB921460.1|CB921460
genomic: GAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|110408420|gb|EC974056.1|EC974056
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: AGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|352789914|gb|FQ478729.1|FQ478729
genomic: AGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|156737183|gb|EV241304.1|EV241304
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: CTCTGTTT-CTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|32245847|gb|CD711666.1|CD711666
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: GATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|110694879|gb|EE072256.1|EE072256
genomic: GATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|34547149|gb|CF515381.1|CF515381
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|34543715|gb|CF511947.1|CF511947
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: TTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|34547238|gb|CF515470.1|CF515470
genomic: TTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: GAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|37187368|gb|CF606721.1|CF606721
genomic: GAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|33404123|gb|CF209750.1|CF209750
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|110729460|gb|EE105432.1|EE105432
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|110386931|gb|EC951566.1|EC951566
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|30132732|gb|CB918071.1|CB918071
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|30129063|gb|CB914402.1|CB914402
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATEST: gi|27582365|gb|CB005060.1|CB005060
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: GATCAGCTTGTTGAGATTATCAAG GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: GATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacattgtatttcagtacatcatgcaaaatatagctcgattgcattaaattaaatacatcttttctgagtggaattaccggatctaggtgggagg
- - - - - TGGAGA
- - - - - - - - - AGTGGA
- - - - - - - - - GTGGAG
- - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgggag