Sequence
atgc intronic sequence ATGC exonic sequenceGTATGGTGTCCCAGGGCAAGATGCCCTTAAATTGGAGGCTGCTATGCGAAAGCGTTTACCGGATCTATTTGAGGAACAACCTGATTTACTTCATAAGCTGgtgagttactgttgtgtgcaaccaaagatgtttgatgtactttgcctatgttacatgggtttgggtatgcaggtatgtgtcaaggtgtctaatccttcaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0036g00570.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA20G36070.1 (Glycine max), 5'ss of exon 5
GTATGGTGTCCCAGGGCAAGATGCCCTTAAATTGGAGGCTGCTATGCGAAAGCGTTTACCGGATCTATTTGAGGAACAACCTGATTTACTTCATAAGCTGgtgagttactgttgtg-tgcaaccaaagatgtttgatgtactttgcctatgttacatgggtttgggtatgcaggtatgtgtcaaggtgtctaatccttcaa
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GTATGGTGTCCCTGGAAAAGATGCCTGCAAATTGGAAGAGGCCATGCGAAAGCATTTACCAGAGCTTTTTGAAGAACAGCCTGACTTGCTTCATAAGCTGgtgagtaaaagtttttctatcacttgacaaatgtcatttaatc-atcttttttctgttagagaggtaacaaaaaagattaaaattattattatgttctcac
upper sequence: Vv14s0036g00570.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA10G31510.1 (Glycine max), 5'ss of exon 6
GTATGGTGTCCCAGGGCAAGATGCCCTTAAATTGGAGGCTGCTATGCGAAAGCGTTTACCGGATCTATTTGAGGAACAACCTGATTTACTTCATAAGCTGgtgagttactgttgtgtgcaaccaaagatgtttgatgtactttgcctatgttacatgggtttgggtatgcaggtatgtgtcaaggtgtctaatccttcaa--
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GTATGGTGTCCCTGGAAAAGATGCCTGCAAATTGGAAGAGGCCATGAGAAAGCATTTACCAGAACTTTTTGAAGAACAGCCTGACCTGCTTCATAAGCTGgtgagtaaattttattttttttatctcttgacaaatgtcatttgattatcttgttttatct--gttagagaggcaaaaaaaaaagattaaaattattattatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71864495|gb|DT013550.1|DT013550EST: AGGAACAACCTGATTTACTTCATAAGCTG GTCACCCAACTTTCGCCCTCCATTGTGAAATTTGAGGGGGTACCTGTCTAT
genomic: AGGAACAACCTGATTTACTTCATAAGCTGgtgagttact ... ttttgtgcagGTCACCCAACTTTCGCCCTCCATTGTGAAATTTGAGGGGGTACCTGTCTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTATGGTGTCCCAGGGCAAGATGCCCTTAAATTGGAGGCTGCTATGCGAAAGCGTTTACCGGATCTATTTGAGGAACAACCTGATTTACTTCATAAGCTGgtgagttactgttgtgtgcaaccaaagatgtttgatgtactttgcctatgttacatgggtttgggtatgcaggtatgtgtcaaggtgtctaatccttcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaccaaa