Sequence
atgc intronic sequence ATGC exonic sequenceCGCTAGCAAAGCCCACGGTGATGGTGCGAAGAAAATGCGTCCACGCGCTAGGGCAATGCCTGGACCAGAAGCCAATGCTGAGCTTCAATCTAATCTTGATgtatgtctctcattttctacttctatctgctaatagttttttcttctttttctggattcaatgattatagtttgcagttttgctgaatctgtagtcctat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0030g01260.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA19G42960.1 (Glycine max), 5'ss of exon 5
CGCTAGCAAAGCCCACGGTGATGGTGCGAAGAAAATGCGTCCACGCGCT---------AGGGCAATGCCTGGACCAGAAGCCAATGCTGAGCTTCAATCTAATCTTGATgtatgtctctcattttctacttctatc--tgctaatagttttttc-----ttctttttctggattcaatgattatagtttgcagttttgctgaatctgtagtcctat
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---------AGCTCAGGCTGATGGTCCAAAGAAGCATCATACACGTGATCGTGCTGCAAAAGCTTTTCCTGCTCCTGAAGCCAATGCTGAGCTTCAATCCAATATTGATgtacgt-tcaaaaagagtacttatatcaataatcacaagtatactagagacgctttgctttgtttataaaaccaccgaatagatgtgctttgagattatta------
upper sequence: Vv14s0030g01260.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA03G40330.1 (Glycine max), 5'ss of exon 6
CGCTAGCAAAGCCCACGGTGATGGTGCGAAGAA------AATGCGTCCACGCGCT---AGGGCAATGCCTGGACCAGAAGCCAATGCTGAGCTTCAATCTAATCTTGATgtatgtctctcattttctacttctatctgctaatagttttttcttctttttctggattcaatgattatagtttgcagttttgctgaatctgtagtcctat---------
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---------AGCTCAGGCTGATGGTCCAAAGAAGCATCGAACACGTAATCGTGCTGCAAAAGCTTTTCCTGCTCCTGAAGCCAATGCTGAGCTTCAATCCAATATTGATgtacgt-tcaaaaggggtacttatat----taataatcacaagta--tactagagatgctttggtt-tggtttataaaaccactgaatggat-gtgctttgagattattMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110371538|gb|EC935644.1|EC935644EST: GGGCAATGCCTGGACCAGAAGCCAATGCTGAGCTTCAATCTAATCTTGAT CGAAGACGCCTAATCTCCCATGCAAATGCAAAGAGTAAGAGTGAAAAGTTT
genomic: GGGCAATGCCTGGACCAGAAGCCAATGCTGAGCTTCAATCTAATCTTGATgtatgtctct ... tctgaaacagCGAAGACGCCTAATCTCCCATGCAAATGCAAAGAGTAAGAGTGAAAAGTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGCTAGCAAAGCCCACGGTGATGGTGCGAAGAAAATGCGTCCACGCGCTAGGGCAATGCCTGGACCAGAAGCCAATGCTGAGCTTCAATCTAATCTTGATgtatgtctctcattttctacttctatctgctaatagttttttcttctttttctggattcaatgattatagtttgcagttttgctgaatctgtagtcctat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT