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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCTATTTGAGTGGCATTCTCACGGTATTTTTCTGTGGGATTGTAATGTCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAAgtatgtattttcctgaaagcaattggaacattttttggtcaggatttatatttttatttcaaaaaataggtcattactggctgtatgcctgttttaatttctgtctataaaatttccacag

Basic information

species Vitis vinifera
transcript Vv14s0030g00710.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 5'ss of exon 9
TATTCTATTTGAGTGGCATTCTCACGGTATTTTTCTGTGGGATTGTAATGTCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAAgtatgt-attttcctgaaagca-attggaacattttttggtcaggatttatatttttatttcaaaaaataggtcattactggctgtatgcctgttttaatttctgtctataaaatttccacag
|  |  ||||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||| ||||| || || ||||||||||||||||| || || |||||  | ||  | || |   || |||  |   |||  || | ||   ||   ||  ||     |||||     ||  |||  |||   |  ||||||    | |  |   |            
TGCTAGATTTGAGCGGCATTCTCACCGTATTCTTCTGTGGTATTGTAATGTCACATTACACTTGGCATAACGTCACAGAGAGTTCAAGAGTTACAACAAAgtaaattataattctcattccatattctactgtttaatgattag--cttcagttcgta----gaaaaactaaacaaaacttactg---gtttgttttgtcctttcacctcag-----------

upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os11g42790.1 (Oryza sativa), 5'ss of exon 8
TATTCTATTTGAGTGGCATTCTCACGGTATTTTTCTGTGGGATTGTAATGTCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAAgtatgtattttcctgaaagcaattggaacattttttggtcaggatttatatttttatttcaaa------aaataggtcattactggctgtatgc-ctgttttaatttctgtcta--taaaatttccacag
|  |  |||||||||| ||||| ||||| || |||||||| ||||||||||| || || || ||||| ||||| ||||||||||| || ||||| |||||||| |||| ||  ||       |  | | | || ||  ||    || || ||||||  |  |       ||||| ||  || |||    | ||        | ||   | ||||  |  |   || | ||
TGCTTGATTTGAGTGGTATTCTTACGGTGTTCTTCTGTGGTATTGTAATGTCGCACTATACCTGGCATAATGTAACAGAGAGTTCCAGGGTCACAACCAAgtaagtatctttatggtttgtttcagcaaacttattattccattttcatttttttaacttgatgatttcaaatatgtatttcctgaaattgtgtatcacactgatgcttctctaattgtatactctatag

upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os05g05590.1 (Oryza sativa), 5'ss of exon 10
TATTCTATTTGAGTGGCATTCTCACGGTATTTTTCTGTGGGATTGTAATGTCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAAgtatgtattttcctgaaagcaattggaacattttttggtcaggatttatatttttatttcaaaaaataggtcattactggctgtatgcctgttttaatttctgtctataaaatttccacag
|  |  || |||||||||||||||| || || |||| ||| || |||||||| |||||||| ||||| ||||| ||||| || || ||  | ||||||||||||||| | ||    || || ||       ||  ||| ||    || |  |||  |||  |  || |    |||  ||  | |||| ||   | |  ||||   |  |    ||  ||||
TGCTAGATCTGAGTGGCATTCTCACTGTGTTCTTCTCTGGAATAGTAATGTCACATTACACTTGGCATAATGTGACAGAAAGCTCTAGGATTACTACCAAgtatgtactgtctgataatcagtt-------ttactgg-caacccttgtggtttcttttagatgaaaa---tatttatg--tatatggcttcctgatattcttcattca----ttttacag

upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G027851_T03 (Zea mays), 5'ss of exon 7
TATTCTATTTGAGTGGCATTCTCACGGTATTTTTCTGTGGGATTGTAATGTCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAAgtatgtattttcctgaaagcaattggaacattttttggtcaggatttatatttttatttcaaaaaataggtcattactggctgtatgcctgttttaatttctgtctataaaatttccacag
|  |  || ||||||||||||| || ||||| ||||| || || || ||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||||||  ||||                   |||||||| |  || |   || ||| | ||      ||||    | | ||| ||| || |||  |||      | |  ||  | ||       
TGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATGTCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAAgtaattattcctt-------------gtcattttttcgctagta---atgtttctgttctgcttaataaacgaatgctgactgaattcct--tttgggcctttttcattcacttag-----

upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G311165_T01 (Zea mays), 5'ss of exon 9
TATTCTATTTGAGTGGCATTCTCACGGTATTTTTCTGTGGGATTGTAATGTCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAAgtatgtattttcctgaaagcaattggaacattttttggtcaggatttatatttt--tatttcaaaaaataggtcattactggctgtatgcctgttttaatttctgtctataaaatttccacag
|  || ||||||||||||||||||| || ||||||||||| || |||||||| || || || ||||| ||||| ||||| ||||| || ||||| |||||||| |||  ||| |     |  |  | ||||||  |  | |  ||  ||  |||  || | |  |   ||    | || ||| || ||  | |                              
TGCTCGATTTGAGTGGCATTCTCACTGTGTTTTTCTGTGGTATCGTAATGTCACACTATACTTGGCAAAATGTAACAGAAAGTTCGAGGGTCACAACCAAgtaagtagcttcataccttctgtatggacatttgcttttgatcatgcattctttggtaatgcttatgctaatgtactattggatggatcacag------------------------------

upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G063492_T01 (Zea mays), 5'ss of exon 10
TATTCTATTTGAGTGGCATTCTCACGGTATTTTTCTGTGGGATTGTAATGTCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAAgtatgtattttcctgaaagcaattggaacattttttggtcaggatttatatttttatttcaaaaaataggt-cattactggctgtatgcctgttttaatttctgtctataaaatttccacag
| ||  |  ||||||| ||||| || || || |||||||| || |||||||| |||||||| ||||| ||||| ||||| ||||| || || || ||||||||||| ||||| || |  || ||       ||| | |  |  |||    || ||| |||  | | || ||  | || | ||||  |  || |||  || | ||                  
TGTTGGACCTGAGTGGAATTCTTACTGTCTTCTTCTGTGGAATAGTAATGTCACATTACACTTGGCATAATGTGACAGAAAGTTCTAGGGTTACCACCAAgtatgtcttttc-tggattcagtt-------tttctagcaaaaattatggttcttacttcttacattatgtatactaattgctgattttctctttccatgt-tgcag---------------

upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G311165_T06 (Zea mays), 5'ss of exon 7
-TATTCTATTTGA-GTGGCATTCTCACGGTATTTTTCTGTGGGATTGTAATGTCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAAgtatgtattttcctgaaagcaattggaac----attttttggtcaggatttatatttttatttcaaaaaataggtcattactggctgtatgcctgttttaatttctgtc-tataaaatttccacag----------------------
  |||| |       ||   ||  ||   |  |  |   |||  |  | || |  |||   |  ||     |     | |    || ||      |   ||  | || |||||  | |||||||    | |    | || ||  | | |  ||   ||||||||  ||       |   | | ||||  | |  |||| ||  |||||||  |||   | |  ||||                       
GCATTCAACCGATCATGAAGTTTCCATTATGATGCTA-ATGGCTTATTTATCTTACATGCTAGCTGAAgtgagcaccctgtacttttaacctctgcagacattt-tgcattttt-taaaagcaaacatagctgtaaattgttattaacgggttgcttttttattgtaagttgctcgatttgagtggcattctcactgtgtt--tttctgtggtatcgtaatgtcacactatacttggcaaaatgtaacag

upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G037342_T01 (Zea mays), 5'ss of exon 8
TATTCTATTTGAGTGGCATTCTCACGGTATTTTTCTGTGGGATTGTAA-TGTCCCATTACACGTGGCACAATGTTACAGAGA-GTTCAAGAGTCACTACCAAgtatgtattttcctgaaagcaattggaacattttttggtcaggatttatatttt--tatttcaaaaaataggtcattactggctgtatgcctgttttaatttctgtctataaaatttccacag
   || ||||||||||||||||||| || |||||||| || || |||| |||| || || || ||||||||||| ||||| | |||| || ||||| |||||||| |||  ||| |     |  |  | ||||||  |  | |  ||  ||  |||  || | |  |   ||      || ||| || ||  | |                              
--CTCGATTTGAGTGGCATTCTCACTGTGTTTTTCTGCGGTATCGTAAATGTCACACTATACTTGGCACAATGTAACAGAAAAGTTCGAGGGTCACAACCAAgtaagtagcttcataccttctgtatggacatttgcttttgatcatgcattctttggtaatgcttatgctaatgttctattggatggatcacag------------------------------

upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA20G37370.1 (Glycine max), 5'ss of exon 10
TATTCTATTTGAGTGGCATTCTCACGGTATTTTTCTGTGGGATTGTAATGTCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAAgtatgtattttcctgaaagcaattggaacattttttggtcaggatttatatttttatttcaaaaaataggtcattactggctgtatgcctgttttaatttctgtctataaaatttccacag
| | |||| |||||||||||||||| ||||| || ||||||||||| ||||| ||||| || ||||| ||||| || |||||||||||| |||||||||||||||| || |         || | ||      |||  ||| ||| ||        | || ||   || | |||  ||     |||   |  |  || |  ||                  
TGTCCTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGGGATTGTCATGTCTCATTATACCTGGCATAATGTGACTGAGAGTTCAAGAATCACTACCAAgtatgtcttct---------aaataga------tttcctcaagatatacgcacac-tgtccaagtctatg-catacctaaacatatttttcatccaactcttgcag---------------

upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA10G30020.1 (Glycine max), 5'ss of exon 10
TATTCTATTTGAGTGGCATTCTCACGGTATTTTTCTGTGGGATTGTAATGTCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAAgtatgtattttcctgaaagcaattggaacattttttggtcaggatttatatttttatttcaaaaaataggtcattactggctgtatgcctgttttaatttctgtctataaaatttccacag
|||  ||| |||||||||||||||| ||||| || ||||| ||||| ||||| ||||| || ||||| || || || |||||||||||| |||||||||||||||| || |    |||   |||    ||  || ||  ||   |  |  | | |   |    ||| |  |  | ||        |||                                 
TATGTTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGGTATTGTTATGTCTCATTATACCTGGCATAACGTGACCGAGAGTTCAAGAATCACTACCAAgtatgtcttct----aaacagatttcctcaagttatgtacactgtccaagtctatgcatacctaaacatattttcacccaactcttgcag-------------------------------

upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA03G40290.1 (Glycine max), 5'ss of exon 9
TATTCTATTTGAGTGGCATTCTCACGGTATTTTTCTGTGGGATTGTAATGTCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAAgtatgtattttcctgaaagcaattggaacattttttggtcaggatttatat--ttttatttcaaaaaataggtcattactggctg-tatgcctgttttaatttctgtctataaaatttccacag
|||  ||| |||||||||||||||| ||||| |||||||||||||| ||||| ||||| || ||||| ||||| || ||||| || ||| | |||||||||||| |  | |    |||  ||||      | ||   |  | | | |||||   | |||||     | ||       |||| ||  | ||     || || | ||  || | | |         
TATGGTATCTGAGTGGCATTCTCACTGTATTCTTCTGTGGGATTGTTATGTCTCATTATACTTGGCATAATGTGACTGAGAGCTCGAGAATAACTACCAAgtatatcctct----aaacaaatt------tcttcaagctaagctatatatggatctatttggggtagtaa-----cactgtctaatttgatatattaaactacttgctgttacag--------

upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA19G42900.1 (Glycine max), 5'ss of exon 9
TATTCTATTTGAGTGGCATTCTCACGGTATTTTTCTGTGGGATTGTAATGTCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAAgtatgtattttcctgaaagcaattggaacattttttggtcaggatttatatttttatttcaaaaaataggtcattactggctgtatgcctgttttaatttctgtctataaaatttccacag
|||  ||| ||||||||||||| || ||||| |||||||||||||| ||||| ||||| || ||||| ||||| || ||||| || ||| | |||||||||||| |  |   ||  |     ||  | |    ||   |  |||| |||  ||   ||      | ||   || |      | |     | ||  || || |   || |            
TATGGTATCTGAGTGGCATTCTTACTGTATTCTTCTGTGGGATTGTTATGTCTCATTATACTTGGCATAATGTGACTGAGAGCTCGAGAATAACTACCAAgtatatcct---ctagacattcttcaagctaagttatatatggatctat--ttgggttgggggtagtaa--cactgtctaatttg-atttattaaaacttgttgttacag-----------

upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: PP1S207_23V6.1 (Physcomitrella patens), 5'ss of exon 10
TATTCTATTTGAGTGGCATTCTCACGGTATTTTTCTGTGGGATTGTAATGTCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAAgtatgtattttcctgaaagcaattggaacattttttggtcaggatttatatttttatttcaaaaaata-ggtcattactggctgtatgcctgttttaatttctgtctataaaatttccacag
| ||||| |||||||| ||||| || || || || ||||| |||||||||||||| || || ||||| |||||||| || || ||  || | || |||| |||   |     ||      ||| ||||  |  | |  |        | |  |   ||    ||| ||  |||||   |   | |     ||| ||||                        
TTTTCTACTTGAGTGGGATTCTTACTGTCTTCTTTTGTGGCATTGTAATGTCCCACTATACCTGGCATAATGTTACTGAAAGCTCCCGAATAACCACCAGgtaaacaaccatctcttctgaatcggaatgtcctgtcattcaatggaacacctaagttgtttaaattatagtcatatattaatatcc-tttgtcttaacac---------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33403305|gb|CF208932.1|CF208932
EST:     TCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAA                         GCATGCTTTTGCGACCTTGTCATTTGTAGCTGAGATTTTCATCTTCCTTTA
genomic: TCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAAgtatgtattt ... atttccacagGCATGCTTTTGCGACCTTGTCATTTGTAGCTGAGATTTTCATCTTCCTTTA
EST: gi|161720457|gb|FC070569.1|FC070569
EST:     TCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAA                         GCATGCTTTTGCGACCTTGTCATTTGTAGCTGAGATTTTCATCTTCCTTTA
genomic: TCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAAgtatgtattt ... atttccacagGCATGCTTTTGCGACCTTGTCATTTGTAGCTGAGATTTTCATCTTCCTTTA
EST: gi|161720623|gb|FC070233.1|FC070233
EST:     TCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAA                         GCATGCTTTTGCGACCTTGTCATTTGTAGCTGAGATTTTCATCTTCCTTTA
genomic: TCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAAgtatgtattt ... atttccacagGCATGCTTTTGCGACCTTGTCATTTGTAGCTGAGATTTTCATCTTCCTTTA