Sequence
atgc intronic sequence ATGC exonic sequenceATCATGTTTATAAAGCCATAGATGCCCTACCTCAGTCAGCTCATCCAATGACCCAGTTTGCAACGGGTGTCATGGCCCTTCAGgttgattaatggactctgaaacatattctgttgtttaattgcattgtttatggttcaaccgttttttcagctcagtcatagtgaatctgaatggctgttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0156g00180.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G16770.1 (Glycine max), 5'ss of exon 9
ATCATGTTTATAAAGCCATAGATGCCCTACCTCAGTCAGCTCATCCAATGACCCAGTTTGCAACGGGTGTCATGGCCCTTCAGgttgattaatggactctgaaacatattctgttgtttaattgcattgt-ttatggttcaaccgttttttcagctcagtcatagtgaatctgaatggctgttt---
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ATTATGCTTATAAGGCAATTGATGCATTGCCTGTTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAGgttgaataacagattctttgatgaacttt--taagtaattgaggggtatcataaaattattgggttgtggcataaatctt--taaaatataataatcaaataat
upper sequence: Vv13s0156g00180.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA15G42300.1 (Glycine max), 5'ss of exon 9
ATCATGTTTATAAAGCCATAGATGCCCTACCTCAGTCAGCTCATCCAATGACCCAGTTTGCAACGGGTGTCATGGCCCTTCAGgttgattaatggactctgaaacatattctgttgtttaattgcattgtttatggt-tcaaccgttttttcagctcagtcatagtgaatctgaatggc-tgttt--
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ATTATGCTTATAAGGCAATTGATGCATTGCCTGTTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAGgttgagtaacagattctttcatgaacttt-taatttaagta-attga--agggtatcataaaattattgggttgtggcgtatatcttcaaaatagaataatcaa
upper sequence: Vv13s0156g00180.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT3G60100.1 (Arabidopsis thaliana), 5'ss of exon 8
ATCATGTTTATAAAGCCATAGATGCCCTACCTCAGTCAGCTCATCCAATGACCCAGTTTGCAACGGGTGTCATGGCCCTTCAGgttgattaatggactctgaaacatattctgttgtttaattgcattgtttatggttcaaccgttttttcagctcagtcatagtgaatctgaatggctgttt--
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---------------CTATAGATGCTTTGCCTTCAACAGCTCATCCAATGACTCAATTTGCTAGTGGTGTTATGGCCCTTCAGgtggattgctctgttatgtactattttttttt-tcta--tgcattctcttagaatttgtt-tattttcaggagcatcttatcttgtt--gattgttattcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718322|gb|FC064764.1|FC064764EST: AGTCAGCTCATCCAATGACCCAGTTTGCAACGGGTGTCATGGCCCTTCAG GTTCAGAGTGAATTTCAGAAGGCATATGAGAAGGGGATTCCAAAATCAAA
genomic: AGTCAGCTCATCCAATGACCCAGTTTGCAACGGGTGTCATGGCCCTTCAGgttgattaat ... tgtatttcagGTTCAGAGTGAATTTCAGAAGGCATATGAGAAGGGGATTCCAAAATCAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCATGTTTATAAAGCCATAGATGCCCTACCTCAGTCAGCTCATCCAATGACCCAGTTTGCAACGGGTGTCATGGCCCTTCAGgttgattaatggactctgaaacatattctgttgtttaattgcattgtttatggttcaaccgttttttcagctcagtcatagtgaatctgaatggctgttt
- - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaacat