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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGCAAGGATTTTATGGTCTCACTGGTTCAGAAAAGTTTTATACTACCAAGTTGCTCTTGTCTATGTGCTCACCAGACTAGTGACCAATGTTTCACAGgtctgcattgatctcctttcctgcttagttgtgctctttttctttgatgaaaatttacttcagtaaaatatgggatgttcatgctccatgtctgtccttgcaatattaatataatttcttatatgaagatgttttcttgtttttcag

Basic information

species Vitis vinifera
transcript Vv13s0156g00080.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0156g00080.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os07g39010.2 (Oryza sativa), 5'ss of exon 8
TTATGCAAGGATTTTATGGTCTCACTGGTTCAGAAAAGTTTTATACTACCAAGTTGCTCTTGTCTATGTGCTCACCAGACTAGTGACCAATGTTTCACAGg--tctgcattgatctcctttcctgcttagttgtgctctttttctttgatgaaaatttacttcagtaaaatatgggatgttcat-gctccatgtctgtccttgcaatattaatataatttcttatatgaagatgttttcttgtttttcag
   | | ||||||| |||| | ||||||||||  ||||| || ||||||||||||||||| || ||  || | || ||| | || ||||||||||||||||  |||  | |  | |||| |  | |||| | |  ||    |  | |        ||   || |  |||||||      ||  | | ||||||| | |  | ||  | |                                         
ACTTTCCAGGATTTCATGGACCCACTGGTTCAAGAAAGTATTGTACTACCAAGTTGCTCTAGTATACATGTTTACTAGATTGGTTACCAATGTTTCACAGgtatctataatcttttcctatttttctta-tgggactgaaatcttct--------ttcctttgataaaaatataatgcatttttagttccatgtatataatggccttgt-----------------------------------------

upper sequence: Vv13s0156g00080.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G060762_T01 (Zea mays), 5'ss of exon 8
TTATGCAAGGATTTTATGGTCTCACTGGTTCAGAAAAGTTTTATACTACCAAGTTGCTCTTGTCTATGTGCTCACCAGACTAGTGACCAATGTTTCACAGgtctgcattgatctcctttcctgctt-----agttgtgctctttttctttgatgaaaatttacttcagtaaaatatgggatgttcatgctccatgtctgtccttgcaatattaatataatttcttatatgaagatgttttcttgtttttcag
|  | | || |||| |||| |  |||||||||  ||||| || ||||||||||||||||| ||||||   || || ||||| ||||| |||||||||||||| |    | ||||  |   |||         | ||   || | |  | |  ||  || ||     |     || ||   | ||||| ||    || |     |||                                              
TCTTTCCAGAATTTCATGGACCTACTGGTTCAAGAAAGTATTGTACTACCAAGTTGCTCTAGTCTATACTCTGACTAGACTGGTGACTAATGTTTCACAGgtatcttgtaatcttttgctctgtgatatagggatgaaatcgtctcttcttttgggaactt---ctaaaggcatttgtacttttcattct----gtttacagatgcg---------------------------------------------

upper sequence: Vv13s0156g00080.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G121458_T01 (Zea mays), 5'ss of exon 8
TTATGCAAGGATTTTATGGTCTCACTGGTTCAGAAAAGTTTTATACTACCAAGTTGCTCTTGTCTATGTGCTCACCAGACTAGTGACCAATGTTTCACAGgtctgcattgatctcctttcctgcttagttgtg----ctctttttctttgatgaaaatttacttcagtaaaatatgggatgttcatgctccatg-tctgtccttgcaatattaatataatttcttatatgaagatgttttcttgtttttcag
|  | | || |||| ||||    |||||||||  | ||| || ||||||||||||||||| ||||||   || || ||| | |||||||||||||||||||| |    | ||||  |   |||     | | |     ||| | | ||   | |  | || ||  ||  |  |||    | ||||| ||   |  |||||                                                    
TCCTTCCAGAATTTCATGGGACTACTGGTTCAAGAGAGTATTGTACTACCAAGTTGCTCTAGTCTATACTCTGACTAGATTGGTGACCAATGTTTCACAGgtatcttgtaatcttttgctctgtgatatagggacgaatctatattttcttttaggaatttctaaaggcatttatac--tattcattctgtttactctgttt--------------------------------------------------