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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCTTGTGGCCAAGGATAAGTTTCATGTCAGCTACAGGGGGGCTGCATTGAGCAGCTCCTTGTCTCAGgtaactggttgctgccaggactagttgtttaacagtgagctatcttttgtgtcagcataaattttcaattttcatgacctcaactatgcttttgtagatt...

Basic information

species Vitis vinifera
transcript Vv13s0147g00220.t01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22014312|gb|BQ799346.1|BQ799346
EST:     AGTTTCATGTCAGCTACAGGGGGGCTGCATTGAGCAGCTCCTTGTCTCAG                         GTAATGATAAACTCTCTGCGGTACTATCTTCGAAGGCCAGAAACCGAGGTG
genomic: AGTTTCATGTCAGCTACAGGGGGGCTGCATTGAGCAGCTCCTTGTCTCAGgtaactggtt ... gaacatgtagGTAATGATAAACTCTCTGCGGTACTATCTTCGAAGGCCAGAAACCGAGGTG
EST: gi|110392201|gb|EC957452.1|EC957452
EST:     AGTTTCATGTCAGCTACAGGGGGGCTGCATTGAGCAGCTCCTTGTCTCAG                         GTAATGATAAACTCTCTGCGGTACTATCTTCGAAGGCCAGAAACCGAGGTG
genomic: AGTTTCATGTCAGCTACAGGGGGGCTGCATTGAGCAGCTCCTTGTCTCAGgtaactggtt ... gaacatgtagGTAATGATAAACTCTCTGCGGTACTATCTTCGAAGGCCAGAAACCGAGGTG
EST: gi|110359925|gb|EC922269.1|EC922269
EST:     AGTTTCATGTCAGCTACAGGGGGGCTGCATTGAGCAGCTCCTTGTCTCAG                         GTAATGATAAACTCTCTGCGGTACTATCTTCGAAGGCCAGAAACCGAGGTG
genomic: AGTTTCATGTCAGCTACAGGGGGGCTGCATTGAGCAGCTCCTTGTCTCAGgtaactggtt ... gaacatgtagGTAATGATAAACTCTCTGCGGTACTATCTTCGAAGGCCAGAAACCGAGGTG
EST: gi|22014843|gb|BQ799877.1|BQ799877
EST:     AGTTTCATGTCAGCTACAGGGGGGCTGCATTGAGCAGCTCCTTGTCTCAG                         GTAATGATAAACTCTCTGCGGTACTATCTTCGAAGGCCAGAAACCGAGGTG
genomic: AGTTTCATGTCAGCTACAGGGGGGCTGCATTGAGCAGCTCCTTGTCTCAGgtaactggtt ... gaacatgtagGTAATGATAAACTCTCTGCGGTACTATCTTCGAAGGCCAGAAACCGAGGTG
EST: gi|22014313|gb|BQ799347.1|BQ799347
EST:     AGTTTCATGTCAGCTACAGGGGGGCTGCATTGAGCAGCTCCTTGTCTCAG                         GTAATGATAAACTCTCTGCGGTACTATCTTCGAAGGCCAGAAACCGAGGTG
genomic: AGTTTCATGTCAGCTACAGGGGGGCTGCATTGAGCAGCTCCTTGTCTCAGgtaactggtt ... gaacatgtagGTAATGATAAACTCTCTGCGGTACTATCTTCGAAGGCCAGAAACCGAGGTG
EST: gi|110697359|gb|EE074276.1|EE074276
EST:     AGTTTCATGTCAGCTACAGGGGGGCTGCATTGAGCAGCTCCTTGTCTCAG                         GTAATGATAAACTCTCTGCGGTACTATCTTCGAAGGCCAGAAACCGAGGTG
genomic: AGTTTCATGTCAGCTACAGGGGGGCTGCATTGAGCAGCTCCTTGTCTCAGgtaactggtt ... gaacatgtagGTAATGATAAACTCTCTGCGGTACTATCTTCGAAGGCCAGAAACCGAGGTG
EST: gi|22014315|gb|BQ799349.1|BQ799349
EST:     AGTTTCATGTCAGCTACAGGGGGGCTGCATTGAGCAGCTCCTTGTCTCAG                         GTAATGATAAACTCTCTGCGGTACTATCTTCGAAGGCCAGAAACCGAGGTG
genomic: AGTTTCATGTCAGCTACAGGGGGGCTGCATTGAGCAGCTCCTTGTCTCAGgtaactggtt ... gaacatgtagGTAATGATAAACTCTCTGCGGTACTATCTTCGAAGGCCAGAAACCGAGGTG
EST: gi|22013161|gb|BQ798180.1|BQ798180
EST:     AGTTTCATGTCAGCTACAGGGGGGCTGCATTGAGCAGCTCCTTGTCTCAG                         GTAATGATAAACTCTCTGCGGTACTATCTTCGAAGGCCAGAAACCGAGGTG
genomic: AGTTTCATGTCAGCTACAGGGGGGCTGCATTGAGCAGCTCCTTGTCTCAGgtaactggtt ... gaacatgtagGTAATGATAAACTCTCTGCGGTACTATCTTCGAAGGCCAGAAACCGAGGTG
EST: gi|110430431|gb|EC996990.1|EC996990
EST:     AGTTTCATGTCAGCTACAGGGGGGCTGCATTGAGCAGCTCCTTGTCTCAG                         GTAATGATAAACTCTCTGCGGTACTATCTTCGAAGGCCAGAAACCGAGGTG
genomic: AGTTTCATGTCAGCTACAGGGGGGCTGCATTGAGCAGCTCCTTGTCTCAGgtaactggtt ... gaacatgtagGTAATGATAAACTCTCTGCGGTACTATCTTCGAAGGCCAGAAACCGAGGTG
EST: gi|110394001|gb|EC958326.1|EC958326
EST:     AGTTTCATGTCAGCTACAGGGGGGCTGCATTGAGCAGCTCCTTGTCTCAG                         GTAATGATAAACTCTCTGCGGTACTATCTTCGAAGGCCAGAAACCGAGGTG
genomic: AGTTTCATGTCAGCTACAGGGGGGCTGCATTGAGCAGCTCCTTGTCTCAGgtaactggtt ... gaacatgtagGTAATGATAAACTCTCTGCGGTACTATCTTCGAAGGCCAGAAACCGAGGTG
EST: gi|110358677|gb|EC923071.1|EC923071
EST:     AGTTTCATGTCAGCTACAGGGGGGCTGCATTGAGCAGCTCCTTGTCTCAG                         GTAATGATAAACTCTCTGCGGTACTATCTTCGAAGGCCAGAAACCGAGGTG
genomic: AGTTTCATGTCAGCTACAGGGGGGCTGCATTGAGCAGCTCCTTGTCTCAGgtaactggtt ... gaacatgtagGTAATGATAAACTCTCTGCGGTACTATCTTCGAAGGCCAGAAACCGAGGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGCTTGTGGCCAAGGATAAGTTTCATGTCAGCTACAGGGGGGCTGCATTGAGCAGCTCCTTGTCTCAGgtaactggttgctgccaggactagttgtttaacagtgagctatcttttgtgtcagcataaattttcaattttcatgacctcaactatgcttttgtagatt

- - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcataaa