Sequence
atgc intronic sequence ATGC exonic sequenceTGATGGTTATGCTTCACTCAAGATGCATCCTTTCTTCAATGGAGTTGACTGGAAGAATTTACGCTCACAAACCCCTCCTAAACTTGCAATGGAAGCGATGgtgtgacttcaattgtgctttaactctctgtctctgtctctgtctttctttgtccctcttttctcgtctaaatccaacttctgttgcagttttgcagaatttggtaaaaaaaggactcctccaaagtaatttatatttgtcttaactttttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0074g00100.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT3G10540.1 (Arabidopsis thaliana), 5'ss of exon 8
TGATGGTTATGCTTCACTCAAGATGCATCCTTTCTTCAATGGAGTTGACTGGAAGAATTTACGCTCACAAACCCCTCCTAAACTTGCAATGGAAGCGATGgtgtgacttcaattgtgctttaactctctgtctctgtctctgtctttctttgtccctcttttctcgtctaaatccaacttctgttgcagttttgcagaatttggtaaaaaaaggactcctccaaagtaatttatatttgtcttaactttttcag
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AGAAGGTTATGATTCTCTCAAGAGACATCCTTTCTTCAAGGGAGTTGACTGGAAGAACCTAAGGTCACAAACTCCTCCAAAACTAGCTCCAGATCCTGCGgtatttaccttctttagttacttctaattgccgcaccaaaaaaattcccgtcttgtccttctcttgagtcagtttta--tctttttcag-----------------------------------------------------------------
upper sequence: Vv13s0074g00100.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT5G04510.2 (Arabidopsis thaliana), 5'ss of exon 8
TGATGGTTATGCTTCACTCAAGATGCATCCTTTCTTCAATGGAGTTGACTGGAAGAATTTACGCTCACAAACCCCTCCTAAACTTGCAATGGAAGCGATGgtgtgacttcaattgtgctttaactctctgtctctgtctctgtctttctttgtccctcttttctcgtctaaatccaacttctgttgcagttt-tgcagaatttggtaaaaaaaggactcctccaaagtaatttatatttgtcttaactttttcag
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AGAAGGTTATGTTGCTCTTAAGAGACATCCTTTCTTTAATGGAGTTGACTGGAAGAATCTAAGGTCCCAGACTCCTCCAAAACTAGCTCCAGATCCTGCGgtatgtctcctcatgtactttggaattatgaggccctttat---tatcattattgttttactcggttattaagtcaattttt-ttacatctgatgcag---------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32458567|gb|CD799741.1|CD799741EST: GAATTTACGCTCACAAACCCCTCCTAAACTTGTGCAATGGAAGCGATG GCTCATTCAAGTGAAGGTGATGATGGTCAGGATTCATGGAACCCTGCACAC
genomic: GAATTTACGCTCACAAACCCCTCCTAAAC-T-TGCAATGGAAGCGATGgtgtgacttc ... actttttcagGCTCATTCAAGTGAAGGAGATGATGGTCAGGATTCATGGAACCCTGCACAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGATGGTTATGCTTCACTCAAGATGCATCCTTTCTTCAATGGAGTTGACTGGAAGAATTTACGCTCACAAACCCCTCCTAAACTTGCAATGGAAGCGATGgtgtgacttcaattgtgctttaactctctgtctctgtctctgtctttctttgtccctcttttctcgtctaaatccaacttctgttgcagttttgcagaatttggtaaaaaaaggactcctccaaagtaatttatatttgtcttaactttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG