1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTCTGAAGCCAAAGATTTATTAGGGGATGATTGGGTGCAAAGACATCGAAGGATTGTGCAGCAGCATGCAAATCAGTACAAGAGGAATGCCTGGGCAAAGgtattctctgacccaattgaatgaaatcagtagaggagtgctctaaggaattgtattttttatttttattttattttttatgagaaacaaaaaaggtatt...
species | Vitis vinifera |
transcript | Vv13s0073g00170.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GGATTGTGCAGCAGCATGCAAATCAGTACAAGAGGAATGCCTGGGCAAAG ATTCTGCAGTGTCTCACCATTCAAGCGCTGACCTCCTCTGGTGGGGGTAGTEST: gi|110363112|gb|EC926682.1|EC926682
genomic: GGATTGTGCAGCAGCATGCAAATCAGTACAAGAGGAATGCCTGGGCAAAGgtattctctg ... tcctctttagATTCTGCAGTGTCTCACCATTCAAGCGCTGACCTCCTCTGGTGGGGGTAGT
EST: GGATTGTGCAGCAGCATGCAAATCAGTACAAGAGGAATGCCTGGGCAAAG ATTCTGCAGTGTCTCACCATTCAAGCGCTGACCTCCTCTGGTGGGGGTAGTEST: gi|110730993|gb|EE108709.1|EE108709
genomic: GGATTGTGCAGCAGCATGCAAATCAGTACAAGAGGAATGCCTGGGCAAAGgtattctctg ... tcctctttagATTCTGCAGTGTCTCACCATTCAAGCGCTGACCTCCTCTGGTGGGGGTAGT
EST: GGATTGTGCAGCAGCATGCAAATCAGTACAAGAGGAATGCCTGGGCAAAG ATTCTGCAGTGTCTCACCATTCAAGCGCTGACCTCCTCTGGTGGGGGTAGTEST: gi|30136995|gb|CB922333.1|CB922333
genomic: GGATTGTGCAGCAGCATGCAAATCAGTACAAGAGGAATGCCTGGGCAAAGgtattctctg ... tcctctttagATTCTGCAGTGTCTCACCATTCAAGCGCTGACCTCCTCTGGTGGGGGTAGT
EST: GGATTGTGCAGCAGCATGCAAATCAGTACAAGAGGAATGCCTGGGCAAAG ATTCTGCAGTGTCTCACCATTCAAGCGCTGACCTCCTCTGGTGGGGGTAGTEST: gi|30297777|gb|CB974571.1|CB974571
genomic: GGATTGTGCAGCAGCATGCAAATCAGTACAAGAGGAATGCCTGGGCAAAGgtattctctg ... tcctctttagATTCTGCAGTGTCTCACCATTCAAGCGCTGACCTCCTCTGGTGGGGGTAGT
EST: GGATTGTGCAGCAGCATGCAAATCAGTACAAGAGGAATGCCTGGGCGAAG ATTCTGCAGTGTCTCACCATTCAAGCGCTGACCTCCTCTGGTGGGGGTAGTEST: gi|110361233|gb|EC924691.1|EC924691
genomic: GGATTGTGCAGCAGCATGCAAATCAGTACAAGAGGAATGCCTGGGCAAAGgtattctctg ... tcctctttagATTCTGCAGTGTCTCACCATTCAAGCGCTGACCTCCTCTGGTGGGGGTAGT
EST: GGATTGTGCAGCAGCATGCAAATCAGTACAAGAGGAATGCCTGGGCAAAG ATTCTGCAGTGTCTCACCATTCAAGCGCTGACCTCCTCTGGTGGGGGTAGT
genomic: GGATTGTGCAGCAGCATGCAAATCAGTACAAGAGGAATGCCTGGGCAAAGgtattctctg ... tcctctttagATTCTGCAGTGTCTCACCATTCAAGCGCTGACCTCCTCTGGTGGGGGTAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTGAAGCCAAAGATTTATTAGGGGATGATTGGGTGCAAAGACATCGAAGGATTGTGCAGCAGCATGCAAATCAGTACAAGAGGAATGCCTGGGCAAAGgtattctctgacccaattgaatgaaatcagtagaggagtgctctaaggaattgtattttttatttttattttattttttatgagaaacaaaaaaggtatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtagagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaggaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaag