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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTCTGGTGGTAGGCTGGAATGCACAATGCAAAATATTGCAGATAATTTTTTCAATACATATGCATCTCGGTGTTATAAAGGTGTAGAAGgtatggcattgtttatatttctgtgtaaagtttgtcacttattgcttccctcatctgtgtgtgtgtttgtgctcatggaaaactatgttggctactgtattagcag

Basic information

species Vitis vinifera
transcript Vv13s0067g01470.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g01470.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA18G02900.1 (Glycine max), 5'ss of exon 9
TGTTTCTGGTGGTAGGCTGGAATGCACAATGCAAAATATTGCAGATAATTTTTTCAATACATATGCATCTCGGTGTTATAAAGGTGTAGAAGgtatg----gcattgtttatatttctgtgtaaagtttgtcacttattgcttccctcatctgtgtgtgtgtttgtgctcatggaaaactatgttggctactgtattagcag
||| ||||||||||| || || ||||||||||||||||| || || |||| || |||| ||||| ||||  | |||||||| | ||| |||||||||    ||||  || || | | ||| | |  |     ||    |||| || |   || |     |  ||||| | |   ||| |  |  |   |    | | |||||
TGTCTCTGGTGGTAGACTTGAGTGCACAATGCAAAATATAGCTGACAATTATTCCAATTCATATTCATCCAGATGTTATAATGATGTGGAAGgtatgtcatgcatcattcatgtatttgtttgatctgacaaaccatatgctccctttcccttt-----tagttgtgtttaacaaaacccttacttaat----tgtgagcag

upper sequence: Vv13s0067g01470.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA11G35520.1 (Glycine max), 5'ss of exon 10
TGTTTCTGGTGGTAGGCTGGAATGCACAATGCAAAATATTGCAGATAATTTTTTCAATACATATGCATCTCGGTGTTATAAAGGTGTAGAAGgtatg----gcattgtttatatttctgtgtaaagtttgtcacttattgcttccctcatctgtgtgtgtgtttgtgctcatggaaaactatgttggctactgtattagcag
||| ||||||||||| || || ||||||||||||||||| || || |||| || |||  ||||| | ||| | |||||||| | ||| |||||||||     |||  || || | | ||| | |  |     ||    || | || |   |  || ||     || ||| |   |||||    ||   || | | | |||||
TGTCTCTGGTGGTAGACTTGAGTGCACAATGCAAAATATAGCTGACAATTATTCCAACTCATATTCTTCTAGATGTTATAATGATGTGGAAGgtatgccatacatcattcatgtatttgtttgatctgacaaaccctatgttccctttgccattgagt-----tgagcttaacaaaaacc---ttacatattatgtgagcag