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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTACATCTATTGGAGGTTTTTATGCCATCAATAGGCGAGGGCAGGTGTTACTTGCTACTGTAAATGAGGCAGCAATTGTGCCTTTCGTCAGTGGCCAAgtatgtttctgagctgatttcctttgtggcatgtcagaaaattatcttctgtgcttatggatgttatctgattcttattgtag

Basic information

species Vitis vinifera
transcript Vv13s0067g01290.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 9
AGCTACATCTATTGGAGGTTTTTATGCCATCAATAGGCGAGGGCAGGTGTTACTTGCTACTGTAAATGAGGCAGCAATTGTGCCTTTCGTCAGTGGCCAAgtatgtttctgagctgatttcctttgtggcatgtcagaaaattatcttctgtgcttatggatgttatctgattcttattgtag
  || |  | | ||| ||||||||||||||||||||| |||| ||||| |||| ||| || || ||||| ||| | ||||||||||| |||||  | ||||||||||     |||  |    |   |||| | |  |     |||  ||  |  | |   || || | | || |         
GTCTTCTGCAAGTGGTGGTTTTTATGCCATCAATAGGAGAGGACAGGTTTTACATGCCACAGTTAATGATGCAACCATTGTGCCTTTTGTCAGCAGTCAAgtatgttctcctgctcttaaattacttggcttatgtgcttgctattatcgtttttaacacattttgttttatgcag-------

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 9
AGCTACATCTATTGGAGGTTTTTATGCCATCAATAGGCGAGGGCAGGTGTTACTTGCTACTGTAAATGAGGCAGCAATTGTGCCTTTCGTCAGTGGCCAAgtatgtttctgagctgatttcctttgtggcatgtcagaaaattatcttctgtgcttatggatgttatctgattcttattgtag
  || |  | | ||| ||||||||||||||||||||| |||| ||||| |||| ||| || || ||||| ||| | ||||||||||| |||||  | ||||||||||     ||   |    |   |||| | |  |     |||  ||  |  | |   || || | | || |         
GTCTTCTGCAAGTGGTGGTTTTTATGCCATCAATAGGAGAGGACAGGTTTTACATGCCACAGTTAATGATGCAACCATTGTGCCTTTTGTCAGCAGTCAAgtatgttctcctgcccttaaattacttggcttatgtgcttgctattatcgtttttaacacattttgttttatgcag-------

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA14G06340.2 (Glycine max), 5'ss of exon 9
AGCTACATCTATTGGAGGTTTTTATGCCATCAATAGGCGAGGGCAGGTGTTACTTGCTACTGTAAATGAGGCAGCAATTGTGCCTTTCGTCAGTGGCCAAgtatgtttctgagctgatt-----tcctttgtggcatgtcagaaaattatcttctgtgcttatggatgttatctgattcttattgtag
|||||||||| | ||||| |||||||||||||| ||| |||| ||||| ||| | |||||||| |||||   | | ||||||  ||| |||||||||||||||||||||||| |   ||     |  ||||| | |     |   || |  | |  |  |||   || | || || || | |  |   
AGCTACATCTGTGGGAGGCTTTTATGCCATCAACAGGAGAGGCCAGGTTTTATTGGCTACTGTTAATGAACAAACCATTGTGAATTTTGTCAGTGGCCAAgtatgtttctgaccatgttataacttttttgttgtaaagtggggtatgaaatgccatttttacaaatttcatttggttatcacag---

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 9
AGCTACATCTATTGGAGGTTTTTATGCCATCAATAGGCGAGGGCAGGTGTTACTTGCTACTGTAAATGAGGCAGCAATTGTGCCTTTCGTCAGTGGCCAAgtatgtttctgagctgatttcctttgtggcatg--tcagaaaattatcttctgtgcttatggatgttatctgattcttattgtag
|||||| ||  ||||||| ||||||||||| |||||| |||| ||||||||| | |||||||| ||||||  | |||| |||  ||| |||||||| || |||||||||||| ||  |    |||||    |      | |||  |  |    |   ||   || |||| || || ||||   ||
AGCTACGTCAGTTGGAGGCTTTTATGCCATTAATAGGAGAGGCCAGGTGTTATTGGCTACTGTTAATGAGCAAACAATCGTGAATTTTGTCAGTGGTCAGgtatgtttctgatcttgtcaattttgtaatgtaaagtgggaaacaaagtgacatttctacaaattttatttgtttattatcacag

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 9
AGCTACATCTATTGGAGGTTTTTATGCCATCAATAGGCGAGGGCAGGTGTTACTTGCTACTGTAAATGAGGCAGCAATTGTGCCTTTCGTCAGTGGCCAAgtatgtttctgagctgatttcctttgtggcatgtcagaaaattatcttctgtgcttatggatgttatctgattcttattgtag
|||||||||| ||||||| ||||||||||| |||||| |||| ||||||||  | |||||||| ||||||  | | || |||  ||| |||||||| || |||||||||||| || ||  | |||||   |||| |       |  |    |    ||  || |||| || || |||    ||
AGCTACATCTGTTGGAGGCTTTTATGCCATTAATAGGAGAGGCCAGGTGTTGTTGGCTACTGTTAATGAGCAAACGATCGTGAATTTTGTCAGTGGTCAGgtatgtttctgatcttatcacttttgt--tatgtaaagtgggaaagtgacatttcaataaattttatttgtttattaccacag

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 9
AGCTACATCTATTGGAGGTTTTTATGCCATCAATAGGCGAGGGCAGGTGTTACTTGCTACTGTAAATGAGGCAGCAATTGTGCCTTTCGTCAGTGGCCAAgtatgtttctgagctgatt-----tcctttgtggcatgtcagaaaattatcttctgtgcttatggatgttatctgattcttattgtag
|||||||||| | ||||| ||||||||||| || ||| |||| ||||| ||| | |||||||| |||||   | | ||||||  ||| |||||||||||||||||||||||| ||  ||     |  ||||| | |     |   || |  |    |  |||   ||   || || || ||||   ||
AGCTACATCTGTGGGAGGCTTTTATGCCATAAACAGGAGAGGCCAGGTTTTATTGGCTACTGTTAATGAACAAACCATTGTGAATTTTGTCAGTGGCCAAgtatgtttctgaccttgttataacttttttgttgtaaagtggggtatgaaatggcatttttacaaattccatttggttattatcacag