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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAGGAATAATTGCAGGTGAAATGAAACATGGTCCTTTGGCTCTAGTTGATGAAAATCTTCCAATTGTTGTTATTGCTACCCGTGATGCTTGCTTCAGgttagttattttttatttttttattgaaagacttaataagttgtttgacattcttcttgctttgtattgacattttctaatgctgacag

Basic information

species Vitis vinifera
transcript Vv13s0064g00050.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0064g00050.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os12g03720.1 (Oryza sativa), 5'ss of exon 9
GTGAAGGAATAATTGCAGGTGAAATGAAACATGGTCCTTTGGCTCTAGTTGATGAAAATCTTCCAATTGTTGTTATTGCTACCCGTGATGCTTGCTTCAGgttagttattttttatttttttattgaaagacttaataagttgtttgacattcttcttgc--tttgtattgacattttctaatgctgacag
| ||||| ||  |||| ||||||||||| ||||| ||  | || ||||| |||||||| ||||| ||  | || |||||||| |||||||| |||||||||| ||    |||  |       | || |   |    | | ||  ||  |||| |||  |   ||  | |  |||| ||| |   ||  |||
GCGAAGGCATGCTTGCTGGTGAAATGAAGCATGGACCACTTGCACTAGTGGATGAAAACCTTCCGATCATCGTCATTGCTACACGTGATGCGTGCTTCAGgtaagc-gctttggacag----actgcagagcacgttcattttcttttcatttttcaaggagttcctctaaacatcttc-acctcttgcag

upper sequence: Vv13s0064g00050.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os11g03900.1 (Oryza sativa), 5'ss of exon 9
GTGAAGGAATAATTGCAGGTGAAATGAAACATGGTCCTTTGGCTCTAGTTGATGAAAATCTTCCAATTGTTGTTATTGCTACCCGTGATGCTTGCTTCAGgttagttattttttatttttttattgaaagacttaataagttgtttgacattcttcttgc--tttgtattgacattttctaatgctgacag
| ||||| ||  |||| ||||||||||| ||||| ||  | || ||||| |||||||| ||||| ||  | || |||||||| |||||||| |||||||||| ||    |||  |       | |  |   |    | | ||  ||  |||| |||  |   ||  | |  |||| ||| |   ||  |||
GCGAAGGCATGCTTGCTGGTGAAATGAAGCATGGACCACTTGCACTAGTGGATGAAAACCTTCCGATCATCGTCATTGCTACACGTGATGCGTGCTTCAGgtaagc-gctttggacag----actacagagcacgttcattttcttttcatttttcaaggagttcctctaaacatcttc-acctcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351013008|gb|FQ433735.1|FQ433735
EST:     GATGAAAATCTTCCAATTGTTGTTATTGCTACCCGTGATGCTTGCTTCAG                         CAAGCAGCAGTCAGTTATCCAGCAACTTCATGCTCGCAAAGGTCGCTTGAT
genomic: GATGAAAATCTTCCAATTGTTGTTATTGCTACCCGTGATGCTTGCTTCAGgttagttatt ... atgctgacagCAAGCAGCAGTCAGTTATCCAGCAACTTCATGCTCGCAAAGGTCGCTTGAT
EST: gi|351028873|gb|FQ434874.1|FQ434874
EST:     GATGAAAATCTTCCAATTGTTGTTATTGCTACCCGTGATGCTTGCTTCAG                         CAAGCAGCAGTCAGTTATCCAGCAACTTCATGCTCGCAAAGGTCGCTTGAT
genomic: GATGAAAATCTTCCAATTGTTGTTATTGCTACCCGTGATGCTTGCTTCAGgttagttatt ... atgctgacagCAAGCAGCAGTCAGTTATCCAGCAACTTCATGCTCGCAAAGGTCGCTTGAT
EST: gi|30329243|gb|CD012505.1|CD012505
EST:     GATGAAAATCTTCCAATTGTTGTTATTGCTACCCGTGATGCTTGCTTCAG                         CAAGCAGCAGTCAGTTATCCAGCAACTTCATGCTCGCAAAGGTCGCTTGAT
genomic: GATGAAAATCTTCCAATTGTTGTTATTGCTACCCGTGATGCTTGCTTCAGgttagttatt ... atgctgacagCAAGCAGCAGTCAGTTATCCAGCAACTTCATGCTCGCAAAGGTCGCTTGAT