1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CCCAGACTTTCTAAATGCTAGAATTAATGGCTTACCCGTCAAAGAGGTCATCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAGgcaatattttcagactcatgattaataaatctaataatttgacatagtctgtgattgtaatcaaacctattgggtcttaacttggtcactaaacatgaaaaatcaatgtttcag
species | Vitis vinifera |
transcript | Vv13s0019g05250.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAG AGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACTEST: gi|34550427|gb|CF518645.1|CF518645
genomic: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAGgcaatatttt ... aatgtttcagAGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACT
EST: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAG AGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACTEST: gi|110725848|gb|EE102783.1|EE102783
genomic: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAGgcaatatttt ... aatgtttcagAGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACT
EST: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAG AGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACTEST: gi|30137894|gb|CB923232.1|CB923232
genomic: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAGgcaatatttt ... aatgtttcagAGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACT
EST: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAG AGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACTEST: gi|351040604|gb|FQ438148.1|FQ438148
genomic: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAGgcaatatttt ... aatgtttcagAGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACT
EST: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAG AGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACTEST: gi|110381192|gb|EC946513.1|EC946513
genomic: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAGgcaatatttt ... aatgtttcagAGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACT
EST: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAG AGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACTEST: gi|28963316|gb|CB342349.1|CB342349
genomic: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAGgcaatatttt ... aatgtttcagAGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACT
EST: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAG AGGGGTGGTGTGTTGATTCAGAAATNNNNNNNATCTTCTGCTGCATCAACTEST: gi|33402579|gb|CF208206.1|CF208206
genomic: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAGgcaatatttt ... aatgtttcagAGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACT
EST: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAG AGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACTEST: gi|110367124|gb|EC931047.1|EC931047
genomic: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAGgcaatatttt ... aatgtttcagAGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACT
EST: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAG AGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACTEST: gi|110392317|gb|EC957652.1|EC957652
genomic: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAGgcaatatttt ... aatgtttcagAGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACT
EST: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAG AGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACTEST: gi|351046814|gb|FQ454424.1|FQ454424
genomic: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAGgcaatatttt ... aatgtttcagAGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACT
EST: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAG AGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACTEST: gi|349811478|gb|FQ409474.1|FQ409474
genomic: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAGgcaatatttt ... aatgtttcagAGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACT
EST: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAG AGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCCGCTGCATCAACTEST: gi|32245213|gb|CD711032.1|CD711032
genomic: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAGgcaatatttt ... aatgtttcagAGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACT
EST: TCAAGGACATCAAATGGTGGGAGGAGGAGTTCACTGAAAAAGTCCAGAAG AGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACTEST: gi|18458671|gb|BM436949.1|BM436949
genomic: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAGgcaatatttt ... aatgtttcagAGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACT
EST: GTTCACTGAAAAAGTCCAGAAG AGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACTEST: gi|110393853|gb|EC959389.1|EC959389
genomic: GTTCACTGAAAAAGTCCAGAAGgcaatatttt ... aatgtttcagAGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACT
EST: TCTAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAG AGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACTEST: gi|18458011|gb|BM436289.1|BM436289
genomic: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAGgcaatatttt ... aatgtttcagAGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACT
EST: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAG AGAGNGTGGTGTGTTGATTCAGAA-TGGNGGGAGATCTTCTGCTGCATCAAEST: gi|29785366|gb|CB342287.2|CB342287
genomic: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAGgcaatatttt ... aatgtttcagAGAG-GTGGTGTGTTGATTCAGAAATGG-GGGAGATCTTCTGCTGCATCAA
EST: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAG AGGGGTGGTGTGTTGATTCAGAAATNNNNNNNATCTTCTGCTGCATCAACT
genomic: TCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAGgcaatatttt ... aatgtttcagAGAGGTGGTGTGTTGATTCAGAAATGGGGGAGATCTTCTGCTGCATCAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCAGACTTTCTAAATGCTAGAATTAATGGCTTACCCGTCAAAGAGGTCATCAAGGACATCAAATGGTTGGAGGAGGAGTTCACTGAAAAAGTCCAGAAGgcaatattttcagactcatgattaataaatctaataatttgacatagtctgtgattgtaatcaaacctattgggtcttaacttggtcactaaacatgaaaaatcaatgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG