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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCTGCTTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaacttttggtgctttttggttatattttcctccaaaattttaaatttggggtggataactagattgattatttgaattgcaattatatgcatcttatgttgtcattcttccttgatattatttctttgttatttccaactatttatcattggaagttcctgcag

Basic information

species Vitis vinifera
transcript Vv13s0019g04190.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04190.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA20G31980.1 (Glycine max), 5'ss of exon 9
CTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCTGCTTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaacttttggtgctttttggttatattttcctccaaaattttaaatttggggtggataactagattgattatttgaattgcaattatatgcatcttatgttgtcattcttccttgatattatttctttgttatttccaactatttatcattggaagttcctgcag
|| || |||||||| ||||| ||||||||||||||| |||||||||||||  ||||||| |||||||| ||||||||| | ||||| ||||| ||||||||||   ||||||  | |  ||| |   | |   | |||      | |   |||| |  ||  |||  ||   ||| | |||||   ||||  |||     ||   |  ||| |  |   |||  |   ||||  | |   |      | | || || |             
CTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAGCTGGCTAAAGCTGCAATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaactt--gcttatttatacatctgagtgcctttg---tctatgattttgactgactaaacagg--gatcaattgaa---caatgttat-----tttcttgatcacttatatctgaggtgtgttct--gatggcttagtgaaatcattatag-------------

upper sequence: Vv13s0019g04190.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA10G35560.1 (Glycine max), 5'ss of exon 9
CTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCTGCTTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaacttttggtgctttttggttatattttcctccaaaattttaaatttggggtggataactagattgattatttgaattgcaattatatgcatcttatgttgtcattcttccttgatattatttctttgttatttccaactatttatcattggaagttcctgcag
|| || |||||||| ||||| ||||||||||||||  | |||||||||||| ||||||| |||||||| ||||||||| | ||||| ||||| ||||||||||   ||||||    |   | |  ||   | |  |||       ||   || | ||  |  |||  ||   ||| | |||||   ||||  |||     ||   |  ||| |  |   |||  |   ||||    |   |      | |||| || |             
CTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCTGCTATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaacttgct-tatgtatatgtccgagtgccctt---gtcttatgatattggccgactaaacagg--gatcaattgaa---caatgttat-----tttcttgatcacttgtgtctgaagtgtgttct--aatggcttagtgaaattattatag-------------

upper sequence: Vv13s0019g04190.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G48850.3 (Arabidopsis thaliana), 5'ss of exon 9
CTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCTGCTTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaacttttggtgctttttggttatattttcctccaaaattttaaatttggggtggataactagattgattatttg-aattgcaattatatgcatcttatgttgtcattcttccttgatattatttctttgttatttccaactatttatcattggaagttcctgcag
|||||  |||| || || |||||||||||||| ||  |||| ||||||  | ||||  |||||||||| ||||| ||||| ||||| || || |||||||||| ||||| ||    | |||||   |  | | | |   | ||| |   ||  |    ||||   ||  ||  || ||  | || || |     |                                                                             
CTTGGTACACCGGTTTTCGATAAACTTGAAGCAGAACTGGCAAAAGCTTGTATGTCGCTACCTGCAACTAAGGGATTTGAGTTTGGAAGCGGCTTTGCAGgtatagaaagtt---atacttttctctcctttgtccaatctaaaatc--aacctcctttgga--gctgtataaatcatacgcaaatgaacccgcag----------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110372418|gb|EC936581.1|EC936581
EST:     TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG                         GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACAGATGCAC
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: gi|30326726|gb|CD009988.1|CD009988
EST:     TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG                         GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: gi|156737328|gb|EV241442.1|EV241442
EST:     TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG                         GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCGC
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: gi|32249612|gb|CD715431.1|CD715431
EST:     TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG                         GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: gi|30131232|gb|CB916571.1|CB916571
EST:     TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG                         GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: gi|32247169|gb|CD712988.1|CD712988
EST:     TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG                         GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: gi|110395213|gb|EC960849.1|EC960849
EST:     TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG                         GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: gi|29783210|gb|CB349240.2|CB349240
EST:     TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG                         GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACAGATGCAC
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: gi|352776660|gb|FQ465458.1|FQ465458
EST:     TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG                         GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: gi|30325548|gb|CD008810.1|CD008810
EST:     TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG                         GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: gi|110703011|gb|EE079483.1|EE079483
EST:     TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG                         GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACAGATGCAC
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: gi|32248621|gb|CD714440.1|CD714440
EST:     TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG                         GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: gi|110378991|gb|EC944156.1|EC944156
EST:     TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG                         GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: gi|156737322|gb|EV241443.1|EV241443
EST:     TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG                         GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCGC
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: gi|29783264|gb|CB349323.2|CB349323
EST:     TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG                         GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACAGATGCAC
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: gi|30324763|gb|CD008025.1|CD008025
EST:     TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG                         GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC