1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GATGAAATTGTATGCAGAACAGGTGTCACAATTATTGACAACTGAAAAAAGCTTGCGCTTACAGTTAACAGCTGATGGAGAGAAGTTCCAACAATTCCAGgttaactttgttttgtgttatctgtcgaacttaaatatttttaaagatttttttcatcagacaatggttatgacttgcataaagctcatttttttttcct...
species | Vitis vinifera |
transcript | Vv13s0019g03960.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCTTGCGCTTACAGTTAACAGCTGATGGAGAGAAGTTCCAACAATTCCAG GAAGCATTGTTAAAGAGCAATGAAGTCTTTGAAACATTTAAGCAAGAGATTEST: gi|30326467|gb|CD009729.1|CD009729
genomic: GCTTGCGCTTACAGTTAACAGCTGATGGAGAGAAGTTCCAACAATTCCAGgttaactttg ... atgtttgcagGAAGCATTGTTAAAGAGCAATGAAGTCTTTGAAACATTTAAGCAAGAGATT
EST: GCTTGCGCTTACAGTTAACAGCTGATGGAGAGAAGTTCCAACAATTCCAG GAAGCATTGTTAAAGAGCAATGAAGTCTTTGAAACATTTAAGCAAGAGATTEST: gi|110726208|gb|EE101788.1|EE101788
genomic: GCTTGCGCTTACAGTTAACAGCTGATGGAGAGAAGTTCCAACAATTCCAGgttaactttg ... atgtttgcagGAAGCATTGTTAAAGAGCAATGAAGTCTTTGAAACATTTAAGCAAGAGATT
EST: GCTTGCGCTTACAGTTAACAGCTGATGGAGAGAAGTTCCAACAATTCCAG GAAGCATTGTTAAAGAGCAATGAAGTCTTTGAAACATTTAAGCAAGAGATTEST: gi|30255027|gb|CB971474.1|CB971474
genomic: GCTTGCGCTTACAGTTAACAGCTGATGGAGAGAAGTTCCAACAATTCCAGgttaactttg ... atgtttgcagGAAGCATTGTTAAAGAGCAATGAAGTCTTTGAAACATTTAAGCAAGAGATT
EST: GCTTGCGCTTACAGTTAACAGCTGATGGAGAGAAGTTCCAACAATTCCAG GAAGCATTGTTAAAGAGCAATGAAGTCTTTGAAACATTTAAGCAGGAGATTEST: gi|77586923|gb|DV222608.1|DV222608
genomic: GCTTGCGCTTACAGTTAACAGCTGATGGAGAGAAGTTCCAACAATTCCAGgttaactttg ... atgtttgcagGAAGCATTGTTAAAGAGCAATGAAGTCTTTGAAACATTTAAGCAAGAGATT
EST: GCTTGCGCTTACAGTTAACAGCTGATGGAGAGAAGTTCCAACAATTCCAG GAAGCATTGTTAAAGAGCAATGAAGTCTTTGAAACATTTAAGCAAGAGATTEST: gi|110693582|gb|EE069938.1|EE069938
genomic: GCTTGCGCTTACAGTTAACAGCTGATGGAGAGAAGTTCCAACAATTCCAGgttaactttg ... atgtttgcagGAAGCATTGTTAAAGAGCAATGAAGTCTTTGAAACATTTAAGCAAGAGATT
EST: TGCGCTTACAGTTAACAGCTGATGGAGAGAAGTTCCAACAATTCCAG GAAGCATTGTTAAAGAGCAATGAAGTCTTTGAAACATTTAAGCAAGAGATTEST: gi|110727231|gb|EE103758.1|EE103758
genomic: TGCGCTTACAGTTAACAGCTGATGGAGAGAAGTTCCAACAATTCCAGgttaactttg ... atgtttgcagGAAGCATTGTTAAAGAGCAATGAAGTCTTTGAAACATTTAAGCAAGAGATT
EST: GCTTGCGCTTACAGTTAACAGCTGATGGAGAGAAGTTCCAACAATTCCAG GAAGCATTGTTAAAGAGCAATGAAGTCTTTGAAACATTTAAGCAAGAGATT
genomic: GCTTGCGCTTACAGTTAACAGCTGATGGAGAGAAGTTCCAACAATTCCAGgttaactttg ... atgtttgcagGAAGCATTGTTAAAGAGCAATGAAGTCTTTGAAACATTTAAGCAAGAGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGAAATTGTATGCAGAACAGGTGTCACAATTATTGACAACTGAAAAAAGCTTGCGCTTACAGTTAACAGCTGATGGAGAGAAGTTCCAACAATTCCAGgttaactttgttttgtgttatctgtcgaacttaaatatttttaaagatttttttcatcagacaatggttatgacttgcataaagctcatttttttttcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcataaa