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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAATGAAGCTTGCTTGAGCGAGGACTTGAACCAGTCATGGGAAGTGCTTGCTGAACCAATACAGACTgtatgtgtttttcttctggttttgtatgctatatgtttgaagcttaaaactgtgaatattgattagatgattctccaaccatcaaggatcaattacttgt...

Basic information

species Vitis vinifera
transcript Vv13s0019g03330.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g03330.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA02G42130.1 (Glycine max), 5'ss of exon 8
GTAAATGAAGCTTGCTTGAGCGAGGACTTGAACCAGTCATGGGAAGTGCTTGCTGAACCAATACAGACTgtatgtgtttttcttctggttttgtatgctatatgtttgaagcttaaaactgtgaatattgattagatgattctccaaccat--caagga--tcaattacttgt---
|| ||||||||||||||||| || ||||||||||| |  ||||| ||||||||||||||||| ||||||||| || | |  ||||||| ||| |||| |   | |||     || || || |   ||||    |    || ||  ||  ||    | ||  | | ||  ||||   
GTTAATGAAGCTTGCTTGAGTGAAGACTTGAACCACTGCTGGGAGGTGCTTGCTGAACCAATTCAGACTgtaagtatatg-cttctggctttatatgtt---tatttag---tttaatctatttgtattttacacggaatgctaaaaatatactgaagacttgagttctttgtggt

upper sequence: Vv13s0019g03330.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA14G06780.1 (Glycine max), 5'ss of exon 8
GTAAATGAAGCTTGCTTGAGCGAGGACTTGAACCAGTCATGGGAAGTGCTTGCTGAACCAATACAGACTgtatgtgtttttcttctggttttgtatgctatatgtttgaagcttaaaactgtgaatattgattagatgattctccaaccatcaagga----tcaattacttgt---
|| ||||||||| ||||||| || |||||||||||||  ||||| ||||||||||||||||| ||||||||| || | |  ||||||| ||| |||| |   | |||     || || || |    |||   ||    || ||  ||  || | | |    | | ||  ||||   
GTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTTGCTGAACCAATTCAGACTgtaagtatatg-cttctggctttatatgtt---tatttag---tttaatctatttgcattttatatggaatgcttaaaatataatgaagtcttgagttctttgtggt