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ATTTCAAGCCTTGCAAACTCAATTCGTGTGCTTGCAAACATGGAAGAACCAATTGGTCATGTTTTGAAGAGAACTGAGgtaaagaaaggggggcttaagcatgtaatttcatatgaatttgaacttatatgtacatgcacacctggttgtatctcagctattactttctggaacagatttacattttccagcaggaatattgtccttgagttaaaacgtttatctgtgatgtttctgatgcctgttcttgcatccag
species | Vitis vinifera |
transcript | Vv13s0019g02360.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TGCTTGCAAACATGGAAGAACCAATTGGTCATGTTTTGAAGAGAACTGAG GTTGCAGATGGACTTATCCTAGAGAAGATGTCATGCCCATTAGGTGTGCTCEST: gi|110701185|gb|EE078493.1|EE078493
genomic: TGCTTGCAAACATGGAAGAACCAATTGGTCATGTTTTGAAGAGAACTGAGgtaaagaaag ... ttgcatccagGTTGCAGATGGACTTATCCTAGAGAAGATGTCATGCCCATTAGGTGTGCTC
EST: TGCTTGCAAACATGGAAGAACCAATTGGTCATGTTTTGAAGAGAACTGAG GTTGCAGATGGACTTATCCTAGAGAAGATGTCATGCCCATTAGGTGTGCTCEST: gi|161709197|gb|FC060516.1|FC060516
genomic: TGCTTGCAAACATGGAAGAACCAATTGGTCATGTTTTGAAGAGAACTGAGgtaaagaaag ... ttgcatccagGTTGCAGATGGACTTATCCTAGAGAAGATGTCATGCCCATTAGGTGTGCTC
EST: TGCTTGCAAACATGGAAGAACCAATTGGTCATGTTTTGAAGAGAACTGAG GTTGCAGATGGACTTATCCTAGAGAAGATGTCATGCCCATTAGGTGTGCTCEST: gi|110725458|gb|EE101979.1|EE101979
genomic: TGCTTGCAAACATGGAAGAACCAATTGGTCATGTTTTGAAGAGAACTGAGgtaaagaaag ... ttgcatccagGTTGCAGATGGACTTATCCTAGAGAAGATGTCATGCCCATTAGGTGTGCTC
EST: TGCTTGCAAACATGGAAGAACCAATTGGTCATGTTTTGAAAAGAACTGAG GTTGCAGATGGACTTATCCTAAAGA-GATGTCATGCCCATTAGGTGT
genomic: TGCTTGCAAACATGGAAGAACCAATTGGTCATGTTTTGAAGAGAACTGAGgtaaagaaag ... ttgcatccagGTTGCAGATGGACTTATCCTAGAGAAGATGTCATGCCCATTAGGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTCAAGCCTTGCAAACTCAATTCGTGTGCTTGCAAACATGGAAGAACCAATTGGTCATGTTTTGAAGAGAACTGAGgtaaagaaaggggggcttaagcatgtaatttcatatgaatttgaacttatatgtacatgcacacctggttgtatctcagctattactttctggaacagatttacattttccagcaggaatattgtccttgagttaaaacgtttatctgtgatgtttctgatgcctgttcttgcatccag
- - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA