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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCAGTGGACTAATATGCCCGATCTTCTTGAGACAGTGGATTTCAAAGATACTTTTCTTGATGTGGACCATCTGAGAGAGTGTTTTTCAGATTATCAGgttgatattattttgacatctttattttgtaaaattacttatatttgtttatatcttccacagtttcatgaactgtaaatggtaatcttatacctttttactgtatttctttag

Basic information

species Vitis vinifera
transcript Vv13s0019g00880.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g00880.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA0048S00340.1 (Glycine max), 5'ss of exon 9
AGCTCAGTGGACTAATATGCCCGATCTTCTTGAGACAGTGGATTTCAAAGATACTTTTCTTGATGTGGACCATCTGAGAGAGTGTTTTTCAGATTATCAGgttgatatt--attttgacatctttattttgtaaaattacttatatttg-tttatatcttccacagt-------ttcatgaactgtaaatggtaatctta-tacctttttactgtatttctttag
 || ||||||||||||||||| ||| |  | |||||||| |||||||||||||||||| ||||||  || ||  | | |||  |||||   |||||| |||||  ||||  ||||| | ||   ||     ||   || | |   | || || || |||||||   |       |  ||||| |  |  |  | ||   | |  | | | |||||||| ||| ||
TGCACAGTGGACTAATATGCCTGATGTATTGGAGACAGTAGATTTCAAAGATACTTTTGTTGATGCTGATCACTTAAAAGAAAGTTTTGTGGATTATGAGgttagtatttcattttcaaattcatagaagttattgtttcatggttgtgattgatgtcttccattatgaattattgtatgaaatcaaggtattgatgcaactttcctctcactgtatt-cttcag

upper sequence: Vv13s0019g00880.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA20G00260.1 (Glycine max), 5'ss of exon 9
AGCTCAGTGGACTAATATGCCCGATCTTCTTGAGACAGTGGATTTCAAAGATACTTTTCTTGATGTGGACCATCTGAGAGAGTGTTTTTCAGATTATCAGgttgatatt--attttgacatctttattttgtaaaattacttatatttg-tttatatcttccacagt-------ttcatgaactgtaaatggtaatctta-tacctttttactgtatttctttag
 || ||||||||||||||||| |||||  | |||||||| ||||||||||| |||||| ||||||  || ||  | | |||  ||||||  |||||| |||||  ||||  ||||| | ||   ||     ||   || | |   | || || || |||||||   |       |  |||||    |  |  | || | | |  | | | |||||||| ||| ||
TGCACAGTGGACTAATATGCCTGATCTATTGGAGACAGTAGATTTCAAAGACACTTTTGTTGATGCTGATCACTTAAAAGAAAGTTTTTTGGATTATGAGgttagtatttcattttcaaattcatagaagttattgttgcatggttgtgattgatgtcttccattatgaattagtgtatgaaactaaggtattgatgtgactttcctctcactgtatt-cttcag