Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatctttattattttgaaaactagcattttattattttctacatgctttacccattattttagctgcttctctaccctcactgccaataaaataagta...

Basic information

species Vitis vinifera
transcript Vv13s0019g00840.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g00840.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os03g16980.3 (Oryza sativa), 5'ss of exon 8
AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatctttattattttgaaaactagcattttattattttctacatgctttacccattattttagctgcttctctaccctcactgccaataaaataagta
|||| || ||||||||||| ||||| || ||||||||  | ||||| |||||||| ||||||||||| || || ||||||||||| ||  | |||||||  |   |    |     | | |||| | | |  || |      ||   ||   |  |||  | | |   ||   | || |               
AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTGTTAGTAACTTCATTGCTCAGGCCGTACGgtaatgctcgctgaacttctttc-aacattctctcaggttgtgtccagttggtcctggagcttattttcatacataattttacag---------------

upper sequence: Vv13s0019g00840.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os03g16980.5 (Oryza sativa), 5'ss of exon 9
AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatctttattattttgaaaactagcattttattattttctacatgctttaccca-ttattttagctgcttctctaccctcactgccaataaaataagta
|||| || ||||||||||| ||||| || ||||||||  | ||||| |||||||| ||||||||||| || || ||||||||||| ||  | |||||||  |   |        ||||    ||| |  ||| ||| || | | |  ||| ||  |   |  |||| | | |                       
AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTgttagtaacttcattgctcaggccgtacggtaatgctcgctg-------aact--tctttcaacattctct-caggttgtgtccagttggtcctggagcttattttcata--------------------

upper sequence: Vv13s0019g00840.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G165357_T02 (Zea mays), 5'ss of exon 8
AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatctttattattttgaaaactagcattttattattttctacatgctttacccattattttagctgcttctctaccctcactgccaataaaataagta
| || |||||||||||||| ||||| || ||||| ||  | ||||| |||||||| || |||||||| ||||| ||||||||||| ||  | |||||||  ||    | |||||        ||||||| | | || || |||    |   ||  || || |||  |||    ||||   |  ||         
AAATCCGGATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGCCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaatgctt----tgttgaatgtc----ttttattttctcct-ca-gctactgcagatagattggcggctaatct--tttcacaatctttag--------

upper sequence: Vv13s0019g00840.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G300412_T01 (Zea mays), 5'ss of exon 15
AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatctttattattttgaaaactagcattttattattttctacatgctttacccattattttagctgcttctctaccctcactgccaataaaataagta
| || |||||||||||||| ||||| || ||||| ||  | ||||| |||||||| || |||||||| ||||| ||||||||||| ||  | |||||||  ||    | |||||        ||||||| | | || || |||    |   ||| || || |||  |||    ||||   |  ||         
AAATCCGGATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGCCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaatgctt----tgttgaatgtc----ttttattttctcct-ca-gctactgcagatatattggcggctaatct--tttcacaatctttag--------

upper sequence: Vv13s0019g00840.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G157772_T02 (Zea mays), 5'ss of exon 5
AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatctttattattttgaaaactagcattttattattttctacatgctttacccattattttagctgcttctctaccctcactgccaataaaataagta
| || || ||||||||||| ||||| || ||||| ||  | ||||| |||||||| || |||||||| ||||| ||||||||||| ||  | |||||||  ||    | |||||        ||||||| | | || || |||    |   ||  || || |||  |||    ||||   |  ||         
AAATCCGAATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGTCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaatgctt----tgttgaatgtc----ttttattttctcct-ca-gctactgcagatagattggcggctaatct--tttcacaatctttag--------

upper sequence: Vv13s0019g00840.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 9
AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatctttattattttgaaaactagcattttattattttctacatgctttacccattattttagctgcttctctaccctcactgccaataaaataagta
| || || ||||||||||| ||||| || ||||||||  | ||||| ||||| || || |||||||| ||||| ||||||||||| ||  | |||||||  || ||   ||      |||  | ||   |  |||| |  | |        |   | |  |  ||   |   ||    |               
AAATCCGAATTGCCAGGATTTTCAACACCTATGGACCAAGGATGAACATTGACGATGGCCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaatgcttgttgaattct---ttagtttcttcccagcttctgccagatagttttggtggctaa--tattttcatgatcttgtag---------------

upper sequence: Vv13s0019g00840.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G177373_T02 (Zea mays), 5'ss of exon 9
AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatctttattattttgaaaactagcattttattattttctacatgctttacccattattttagctgcttctctaccctcactgccaataaaataagta
| || |||||||||||||| || || || ||||| ||  | ||||| |||||||| || |||||||| ||||| ||||||||||| ||  | |||||||  ||    | |||||     | |||||||| | |  |    |||    |   ||| || || |||  |||    ||||   |  ||         
AAATCCGGATTGCCAGGATTTTTAACACCTATGGGCCTAGGATGAACATTGATGATGGCCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaatgctt----tgttgaat----gtattttattttctcttga--gctactgcagatatattggcggctaatct--tttcacaatctttag--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30130365|gb|CB915704.1|CB915704
EST:     TATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: TATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|110699424|gb|EE076409.1|EE076409
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|30132964|gb|CB918303.1|CB918303
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|33410540|gb|CF216167.1|CF216167
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|71882833|gb|DT031888.1|DT031888
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|30303799|gb|CB980593.1|CB980593
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|110690502|gb|EE067657.1|EE067657
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|110702160|gb|EE080556.1|EE080556
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGGTGA-TCCTTGACTGTTCAAGCTCCTGGAA-ACAAACTCNGAGTTTTT
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGG-TGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTT
EST: gi|22012135|gb|BQ797169.1|BQ797169
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|156736486|gb|EV240607.1|EV240607
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|110361965|gb|EC925471.1|EC925471
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|110359526|gb|EC921159.1|EC921159
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|27583335|gb|CB006030.1|CB006030
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|110694959|gb|EE072432.1|EE072432
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|110369469|gb|EC933629.1|EC933629
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|110357315|gb|EC920771.1|EC920771
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCT
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCT
EST: gi|30132893|gb|CB918232.1|CB918232
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|30303733|gb|CB980527.1|CB980527
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|110723312|gb|EE100478.1|EE100478
EST:     TGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: TGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|110720753|gb|EE096961.1|EE096961
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|110714087|gb|EE090592.1|EE090592
EST:     ATATTGATGACNGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAAC-CAAACTCGGGAGTTTTT
genomic: ATATTGATGAC-GGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGG-AGTTTTT
EST: gi|110721136|gb|EE097790.1|EE097790
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|110719051|gb|EE096588.1|EE096588
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|110687991|gb|EE066031.1|EE066031
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|110373757|gb|EC938084.1|EC938084
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|83275690|gb|DV939698.1|DV939698
EST:     AGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|110732601|gb|EE108029.1|EE108029
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|33407947|gb|CF213574.1|CF213574
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|33408479|gb|CF214106.1|CF214106
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|71862913|gb|DT011968.1|DT011968
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|32246001|gb|CD711820.1|CD711820
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|110696154|gb|EE074987.1|EE074987
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|110360290|gb|EC923209.1|EC923209
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|110356627|gb|EC919593.1|EC919593
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: gi|30299440|gb|CB976234.1|CB976234
EST:     AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG                         TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatctttattattttgaaaactagcattttattattttctacatgctttacccattattttagctgcttctctaccctcactgccaataaaataagta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa