1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCCTCCTGGGATTGTGCTAAGTGCTGCTACTTCATTCTGGCTTCCAGTTCCGCCAAAGAGAGTATTTGATTTTCTCCGTGATGAGAATTCTCGCAGCGAGgtatgattgtcagagattaaatatgtttgggataattggattcctaattaacttgatgtttatcctaacttcattttgtacaatcttgtacaaaagtcat...
species | Vitis vinifera |
transcript | Vv12s0059g02310.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CGCCAAAGAGAGTATTTGATTTTCTCCGTGATGAGAATTCTCGCAGCGAG TGGGATATTCTCTCAAATGGTGAGGTTGTTCAAGAEST: gi|110418253|gb|EC984389.1|EC984389
genomic: CGCCAAAGAGAGTATTTGATTTTCTCCGTGATGAGAATTCTCGCAGCGAGgtatgattgt ... atatctgcagTGGGATATTCTCTCAAATGGTGGGGTTGTTCAAGA
EST: CGCCAAAGAGAGTATTTGATTTTCTCCGTGATGAGAATTCTCGCAGCGAG TGGGATATTCTCTCAAATGGTGGGGTTGTTCAAGAAATGGCACATATAGCG
genomic: CGCCAAAGAGAGTATTTGATTTTCTCCGTGATGAGAATTCTCGCAGCGAGgtatgattgt ... atatctgcagTGGGATATTCTCTCAAATGGTGGGGTTGTTCAAGAAATGGCACATATAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTCCTGGGATTGTGCTAAGTGCTGCTACTTCATTCTGGCTTCCAGTTCCGCCAAAGAGAGTATTTGATTTTCTCCGTGATGAGAATTCTCGCAGCGAGgtatgattgtcagagattaaatatgtttgggataattggattcctaattaacttgatgtttatcctaacttcattttgtacaatcttgtacaaaagtcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaaag