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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGAAATTTGGTGAGGCAGGAAACAAATATTTCCGTCACGCTACAGGACAGCTATATGCCATTTCAAAAGATTTGGCTAGATATATATCAATAAACCAgtaagttttcacttaccattttcaaggggtaaaaaaggaatcagcaaattcttggattgatgtatttcataatatcctcttccactttttatggttattttgtacatgattattgcag

Basic information

species Vitis vinifera
transcript Vv12s0059g00640.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os02g06840.2 (Oryza sativa), 5'ss of exon 10
ATTGGAAATTTGGTGAGGCAGGAAACAAATATTTCCGTCACGCTACAGGACAGCTATATGCCATTTCAAAAGATTTGGCTAGATATATATCAATAAACCAgtaagttttcacttaccattttcaaggggtaaaaaaggaatcagcaaattcttggattgatgtatttcataatatcctcttccactttttatggttattttgtacatgattattgcag
||||||||||||| ||  |||||||||||||||| || || ||||| || ||  | ||||| |||||||||||| | || |  || ||||| ||||||  || || |  ||| |     |||  |    ||     |    ||   |   ||||   | || | || || ||   |   | |   ||  | |  |    |||                
ATTGGAAATTTGGCGAACCAGGAAACAAATATTTTCGGCATGCTACTGGTCAATTGTATGCTATTTCAAAAGATCTAGCAACCTACATATCTATAAACAGgtgagataacacctg----ttttcatatttacctgtgtgcacatgcacgccttgttctcat-tgttgcacaaa--ctaatgctgattcctctaatccaattgctag------------

upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA06G46230.1 (Glycine max), 5'ss of exon 9
ATTGGAAATTTGGTGAGGCAGGAAACAAATATTTCCGTCACGCTACAGGACAGCTATATGCCATTTCAAAAGATTTGGCTAGATATATATCAATAAACCAgtaagtt----ttcacttaccattttcaaggggtaaaaaaggaatcagcaaattcttggattgatgtatttcataatatcctcttccactttttatggttattttgtacatgattattgcag
| ||||| ||||| ||||| ||||||| ||| |||||||| || ||||||||| | |||||||||||||| |||||||||| ||| |||||||| ||||||||||||    ||||  |  |||| |||      | | ||  ||   |  ||   |  | ||||   | ||     ||||       ||||||    |  |                     
ACTGGAAGTTTGGAGAGGCTGGAAACAGATACTTCCGTCATGCCACAGGACAGTTGTATGCCATTTCAAACGATTTGGCTACATACATATCAATTAACCAgtaagttctacttcatctcacattctcacttatcagagaaaaaaaaggataagggtctggttgagtaagttt----tatctaaaagaacttttaggagagaaaa------------------

upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA06G46230.2 (Glycine max), 5'ss of exon 9
ATTGGAAATTTGGTGAGGCAGGAAACAAATATTTCCGTCACGCTACAGGACAGCTATATGCCATTTCAAAAGATTTGGCTAGATATATATCAATAAACCAgtaagtt----ttcacttaccattttcaaggggtaaaaaaggaatcagcaaattcttggattgatgtatttcataatatcctcttccactttttatggttattttgtacatgattattgcag
    ||| ||||| ||||| ||||||| ||| |||||||| || ||||||||| | |||||||||||||| |||||||||| ||| |||||||| ||||||||||||    ||||  |  |||| |||      | | ||  ||   |  ||   |  | ||||   | ||     ||||       ||||||    |  |     ||              
----GAAGTTTGGAGAGGCTGGAAACAGATACTTCCGTCATGCCACAGGACAGTTGTATGCCATTTCAAACGATTTGGCTACATACATATCAATTAACCAGTAAgttctacttcatctcacattctcacttatcagagaaaaaaaaggataagggtctggttgagtaagttt----tatctaaaagaacttttaggagagaaaaaata--------------

upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA12G31980.1 (Glycine max), 5'ss of exon 9
ATTGGAAATTTGGTGAGGCAGGAAACAAATATTTCCGTCACGCTACAGGACAGCTATATGCCATTTCAAAAGATTTGGCTAGATATATATCAATAAACCAgtaagttttcacttaccattttcaaggggtaaaaaaggaatcagcaaattcttggattgatgtatt--tcataatatcctcttccactttttatggttattttgtacatgattattgcag
| ||||||||||| ||||| |||||||| || ||||| ||||| ||||||||| | |||||||||||||||||| |||||| |||||| ||||  ||| ||| |||  |  | |  || ||    |||  |||  |   |  |  | |||  |||| | |  |  |  |   |||||  |  ||||| |  |  | ||||| || |  |  || |  |||
ACTGGAAATTTGGAGAGGCCGGAAACAAGTACTTCCGCCACGCCACAGGACAGTTGTATGCCATTTCAAAAGATCTGGCTACATATATTTCAAATAACAAgtgagtgctt-catctcacttgtgggggaaaaagcaattaaaataacatttatggactaaaatggtggtgcaaatattgtgatccacatgatg-gcttattgtgcatgtctttgtctcag

upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA12G10520.1 (Glycine max), 5'ss of exon 9
ATTGGAAATTTGGTGAGGCAGGAAACAAATATTTCCGTCACGCTACAGGACAGCTATATGCCATTTCAAAAGATTTGGCTAGATATATATCAATAAACCAgtaagttttcacttaccattttcaaggggtaaaaaaggaatcagcaaattcttggattgatgtatttcataatatcctcttccactttttatggttattttgtacatgattattgcag
| ||||||||||| ||||| |||||||  || |||||||| || ||||| ||| | ||||||||||| || |||||||||| ||| |||||||| |||||||||||  |   | | |    | |   |  |||||| | || ||   |   |||  |  || |  |  | ||           | ||||    |  |      | | ||         
ACTGGAAATTTGGAGAGGCTGGAAACAGGTACTTCCGTCATGCCACAGGGCAGTTGTATGCCATTTCGAATGATTTGGCTACATACATATCAATTAACCAgtaagtcctacttcatctcacttatcagagaaaaaaaggataagggtacgtttgagtaaattttatctaaaagg---------atttttaggagaaaaaaataagaaga---------

upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA13G38500.1 (Glycine max), 5'ss of exon 9
ATTGGAAATTTGGTGAGGCAGGAAACAAATATTTCCGTCACGCTACAGGACAGCTATATGCCATTTCAAAAGATTTGGCTAGATATATATCAATAAACCAgtaagttttcacttaccattttcaaggggtaaaaaaggaatcagcaaattcttggattgatgtatt--tcataatatcctcttccactttttatggttattt-tgtacatgattattgcag
| ||||||||||| ||||| |||||||| || ||||| ||||| || |||||| | |||||||||||||||||| |||||| |||||| ||||  ||| ||| |||  |  | |  || ||    ||   |||| |   |  | ||||||  |||| | |  |  |  |   ||| |  |  ||||| |  | || |||||| ||||  |  || |  |||
ACTGGAAATTTGGAGAGGCTGGAAACAAGTACTTCCGCCACGCCACTGGACAGTTGTATGCCATTTCAAAAGATCTGGCTACATATATTTCAAATAACAAgtgagtgctt-catctcacttgtggggaaaaaaacaattaaaatcaaatttatggactaaaatggtggtagaaatgttgtgatccacatgat-tgcttatttgtgtatttctttgtctcag

upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT2G32430.1 (Arabidopsis thaliana), 5'ss of exon 9
ATTGGAAATTTGGTGAGGCAGGAAACAAATATTTCCGTCACGCTACAGGACAGCTATATGCCATTTCAAAAGATTTGGCTAGATATATATCAATAAACCAgtaagttttcacttaccattttcaaggggtaaaaaaggaatcagcaaattcttggattgatgtatttcataatatcctcttccactttttatggttattttgtacatgattattgcag
|||||||||||||||||   |||||||| || |||||||||||||| |||||| |||| |||||||| | ||| ||||||   || || ||  | || ||||||| ||| |  | |  |||  |  |  | |   | |  |||     ||||     | |  | | | | || ||  ||                                       
ATTGGAAATTTGGTGAGAATGGAAACAAGTACTTCCGTCACGCTACTGGACAGTTATACGCCATTTCTAGAGACTTGGCTTCTTACATTTCCCTTAATCAgtaagatttgaactcc--tttgtaccgcatcatttatgcctca-----ttctccatctaacttctcttacaaaatgttccag------------------------------------

upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G05170.2 (Arabidopsis thaliana), 5'ss of exon 9
ATTGGAAATTTGGTGAGGCAGGAAACAAATATTTCCGTCACGCTACAGGACAGCTATATGCCATTTCAAAAGATTTGGCTAGATATATATCAATAAACCAgtaagttttcacttaccattttcaaggggtaaaaaaggaatcagcaaattcttggattgatgtatttcataatatcctcttccactttttatggttattttgtacatgattattgcag
| ||||| ||||||||    || |||||||| |||||||| ||||| |||||| |||| ||||||||||  || ||||||   ||||||||||| || ||||||| |     | |    || ||  |  | |          |||  |||  |  | | |||||  || |    | ||  | ||  ||  ||| ||                      
ACTGGAAGTTTGGTGAAAATGGGAACAAATACTTCCGTCATGCTACTGGACAGTTATACGCCATTTCAAGGGACTTGGCTTCTTATATATCAATCAATCAgtaagatgaagatga--gattacattgtatca---------tagctcatttgttaactcatgtaactctt--cgttcttatacatgttaaatgtttcag-------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30137885|gb|CB923223.1|CB923223
EST:     CAGCTATATGCCATTTCAAAAGATTTGGCTAGATATATATCAATAAACCA                         GCATGTTCTTCACAAGTATGCTAATGAGGACGTTTCAC
genomic: CAGCTATATGCCATTTCAAAAGATTTGGCTAGATATATATCAATAAACCAgtaagttttc ... attattgcagGCATGTTCTTCACAAGTATGCTAATGAGGACGTTTCAC