Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCATCACACATTTGCCACTGCAGGCTCTGACGGTGCTTTTAATTTCTGGGACAAGGATAGTAAACAGAGACTCAAGgtaatctcaaggattcctttttgaatatgttcttctcgttgttttcggacactgttactcttctattattctagattctattgtttttaccctaatcgga...

Basic information

species Vitis vinifera
transcript Vv12s0055g00900.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0055g00900.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os08g07960.1 (Oryza sativa), 5'ss of exon 9
GTGCATCACACATTTGCCACTGCAGGCTCTGACGGTGCTTTTAATTTCTGGGACAAGGATAGTAAACAGAGACTCAAGgtaatctcaaggattcctttttgaatatgttcttctcgttgttttcggacactgttactcttctattattctagattctattgttttta----ccctaatcgga-
|| |||||||| ||||| ||||| || || || || || |||||||||||||| |||||||| ||||| ||||| |||||    | | |    |  |||||||  |    || |  | ||| | |  ||||  || | || |    ||    ||||  |  ||||||     | |||| |   
GTTCATCACACGTTTGCAACTGCTGGATCAGATGGCGCATTTAATTTCTGGGATAAGGATAGCAAACAAAGACTGAAGgt---ttgatgttggctcttttgaagttccatttgtactggttattg--cacttgtatttttgttcccttgagtattcagtgatttttaatagtcataattgctt

upper sequence: Vv12s0055g00900.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G058498_T01 (Zea mays), 5'ss of exon 9
GTGCATCACACATTTGCCACTGCAGGCTCTGACGGTGCTTTTAATTTCTGGGACAAGGATAGTAAACAGAGACTCAAGgta-----atctcaaggattcctttttgaatat--gttcttctcgttgttttcggacactgttactcttctattattctagattctattgtttttaccctaatcgga
|| |||||||||||||| ||||| || |||||||||||||| || |||||||| |||||||| || ||||| || ||||||     || || | |  |  || |||| | |   || |  | || | | | |    ||||| |   || ||||| || |||| | |  | |||||  |  |    
GTCCATCACACATTTGCAACTGCTGGATCTGACGGTGCTTTCAACTTCTGGGATAAGGATAGCAAGCAGAGGCTAAAGgtagaccaatttccatggctttttgttgattttcacttgtgttggtagctgttgatttctgttgca--tcgattatccttgattttgtgttgtttac--tggtt---

upper sequence: Vv12s0055g00900.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA15G05740.1 (Glycine max), 5'ss of exon 8
GTGCATCACACATTTGCCACTGCAGGCTCTGACGGTGCTTTTAATTTCTGGGACAAGGATAGTAAACAGAGACTCAAGgtaatctcaaggattcctttttgaatatgttcttctcgttgttttcggacactgttactcttctattattctagattctatt--gtttttaccctaatcgga---------------
|| || ||||||||||| ||| | || ||||| |||||||| ||||| ||||| ||||||||||||||||| |||||||| ||  ||     |  || || || |  |||   ||  |  |  | |||||   || | ||  | |||| | |     |||   |  ||| |  |  |  |               
GTACACCACACATTTGCAACTTCTGGTTCTGATGGTGCTTTCAATTTTTGGGATAAGGATAGTAAACAGAGGCTCAAGgttattcca-----tttttattaaacac-ttccattcaatcctaactgacaca--tattgttgcaatatttttggcataattacatgcttatctaatgcaaacttgtcttatttcag

upper sequence: Vv12s0055g00900.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G19260.1 (Glycine max), 5'ss of exon 8
GTGCATCACACATTTGCCACTGCAGGCTCTGACGGTGCTTTTAATTTCTGGGACAAGGATAGTAAACAGAGACTCAAGgtaatctcaaggattcctttttgaatatgttcttctcgttgttttcggacac-tgttactcttctattattctagattctattgtttttaccctaatcgga---------------
|| || ||||||||||| ||| | || ||||| |||||||| ||||| ||||| ||||||||||||||| | |||||||| ||  ||     |  || || || |  | | |    ||  |  |  |||| | ||    |  |||| ||    ||  |    |  ||| |  |  |  |               
GTACACCACACATTTGCAACTTCTGGTTCTGATGGTGCTTTCAATTTTTGGGATAAGGATAGTAAACAGCGGCTCAAGgttattcca-----tttttattaaacacttccattcaattcctaaccaacacatattgtagtgatatt-tttggcataatcacatgcttatctaatgcaaacgtgtcttgtttcag

upper sequence: Vv12s0055g00900.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G80670.1 (Arabidopsis thaliana), 5'ss of exon 9
GTGCATCACACATTTGCCACTGCAGGCTCTGACGGTGCTTTTAATTTCTGGGACAAGGATAGTAAACAGAGACTCAAGgtaat---ctcaaggattcctttttgaatatgttcttctcgttgttttcggacactgttactcttctattattctagattctattgtttttaccctaatcgga
|| |||  ||| ||||| ||||| || || || |||||||| |||||||||||||| ||||||||||| |||||||||||| |   |||  | |||  ||||| | | ||||   |  ||  || ||  ||| | ||  | |||| |    | | |                         
GTACATGGCACTTTTGCAACTGCTGGGTCAGATGGTGCTTTCAATTTCTGGGACAAAGATAGTAAACAAAGACTCAAGgtattttcctcctgcattgattttttattttgttaaccaagtaattatctaacagttttg-tattctgtgtccccacag------------------------

upper sequence: Vv12s0055g00900.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: EFJ25923 (Selaginella moellendorffii), 5'ss of exon 8
GTGCATCACACATTTGCCACTGCAGGCTCTGACGGTGCTTTTAATTTCTGGGACAAGGATAGTAAACAGAGACTCAAGgtaatctcaaggattcctttttgaatatgttcttctcgttgttttcggacactgttactcttctattattctagattctattgtttttaccctaatcgga
|||  |   ||||| || ||  |||||||||| ||||||||||| |||||||||||||| || || ||||| |||||||||       | |||     |        |  || | | ||| ||  |   | ||||   |||| ||  || | |                         
GTGTTTGGAACATTCGCTACATCAGGCTCTGATGGTGCTTTTAACTTCTGGGACAAGGACAGCAAGCAGAGGCTCAAGgta-------gaattttcactct------tctttgttggtgtgtttcggtgc-gttatctttctttttctccacag------------------------

upper sequence: Vv12s0055g00900.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: EFJ10886 (Selaginella moellendorffii), 5'ss of exon 8
GTGCATCACACATTTGCCACTGCAGGCTCTGACGGTGCTTTTAATTTCTGGGACAAGGATAGTAAACAGAGACTCAAGgtaatctcaaggattcctttttgaatatgttcttctcgttgttttcggacactgttactcttctattattctagattctattgtttttaccctaatcgga
|||  |   ||||| || ||  |||||||||| ||||||||||| |||||||||||||| || || ||||| |||||||||       | |||     |        |  || | | ||| ||  |   | ||||    ||| ||  || | |                         
GTGTTTGGAACATTCGCTACATCAGGCTCTGATGGTGCTTTTAACTTCTGGGACAAGGACAGCAAGCAGAGGCTCAAGgta-------gaattttcactct------tctttgttggtgtgtttcggtgc-gttatctctctttttctccacag------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27584961|gb|CB007656.1|CB007656
EST:     CTGACGGTGCTTTTAATTTCTGGGACAAGGATAGTAAACAGAGACTCAAG                         GCTATGTCAAGGTGCAGTCAACCTATACCTTGCAGTACTTTCAACAATGAT
genomic: CTGACGGTGCTTTTAATTTCTGGGACAAGGATAGTAAACAGAGACTCAAGgtaatctcaa ... tgattttcagGCTATGTCAAGGTGCAGTCAACCTATACCTTGCAGTACTTTCAACAATGAT
EST: gi|110386126|gb|EC950701.1|EC950701
EST:     CTGACGGTGCTTTTAATTTCTGGGACAAGGATAGTAAACAGAGACTCAAG                         GCTATGTCAAGGTGCAGTCAACCTATACCTTGCAGTACTTTCAACAATGAT
genomic: CTGACGGTGCTTTTAATTTCTGGGACAAGGATAGTAAACAGAGACTCAAGgtaatctcaa ... tgattttcagGCTATGTCAAGGTGCAGTCAACCTATACCTTGCAGTACTTTCAACAATGAT
EST: gi|30329697|gb|CD012959.1|CD012959
EST:     CTGACGGTGCTTTTAATTTCTGGGACAAGGATAGTAAACAGAGACTCAAG                         GCTATGTCAAGGTGCAGTCAACCTATACCTTGCAGTACTTTCAACAATGAT
genomic: CTGACGGTGCTTTTAATTTCTGGGACAAGGATAGTAAACAGAGACTCAAGgtaatctcaa ... tgattttcagGCTATGTCAAGGTGCAGTCAACCTATACCTTGCAGTACTTTCAACAATGAT