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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATTTTTAATTTTGgtccaaaagtgtccatattcacaattttattgagacgaagataagtttctgttcatgtgcatagtgttgaagcaactgtgaccatttcctgcttctttgcag

Basic information

species Vitis vinifera
transcript Vv12s0055g00360.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0055g00360.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G102475_T02 (Zea mays), 5'ss of exon 9
GTTATTTTTAATTTTGgtccaaaagtgtccatattcacaattttattgagacgaagataagtttctgttcatgtgca----tagtgttgaagcaactgtgaccatttcctgcttctttgcag--------------------------------------------------------------
|||||||||| || ||||||||||||||||||||| ||||||  ||||||  |||||||  || ||  |  | ||||    |  ||||  |  |||| | |   | ||    | | ||| |                                                               
GTTATTTTTATTTCTGGTCCAAAAGTGTCCATATTGACAATTAAATTGAGG-GAAGATACATT-CTAATTgtatgcagacctgatgtttga-taactattagtgtatctgtttacattgtatactaatgaacaatatttgttccatgtttgactcttatctcattacccccttacgtttggcag

upper sequence: Vv12s0055g00360.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA15G05410.5 (Glycine max), 5'ss of exon 8
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTATTTTTAATTTTGgtccaaaagtgtccatattcacaattttattgagacgaagataagtttctgttcatgtgcatagtgttgaagcaactgtgaccatttcctgcttctttgcag
                                                                                                                                                                                                                ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| || ||                                     
CTCTTAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGCTGTTTCTTCAGTGGACTGAGCATCATAAAAGACTAAGCAATTTTATAAGgtttgcccttttcaactgtaaactaataatgggcatgagtctatagctagtcccttcaagaactggaaatctattatatctgatatcaaataatgctctgctctgcaggttatttttaattttggtccaaaagtgtccatattcaca-ttttattcagacgaagataagtttctgttcatgtgaattgtag-----------------------------------

upper sequence: Vv12s0055g00360.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA15G05410.4 (Glycine max), 5'ss of exon 9
GTTATTTTTAATTTTGgtccaaaagtgtccatattcacaattttattgagacgaagataagtttctgttcatgtgcat---agtgttgaagcaact--gtgacca----tttcctgcttctttgcag--------------------------------------------------------------------------------
                                 |||||| ||||||| ||||||||||||||||||||||||||| ||   ||||| |||||||||   ||||      |||||||||  || ||||                                                                                
---------------------------------TTCACA-TTTTATTCAGACGAAGATAAGTTTCTGTTCATGTGAATTGTAGTGTCGAAGCAACTTGATGACTGGATGTTTCCTGCTAATT-GCAGGATTTTAGgtagacatatgaaagtttttctttaaactttttggtaccttctttgattgaatgtggcatgtaattttgcag

upper sequence: Vv12s0055g00360.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G15200.2 (Arabidopsis thaliana), 5'ss of exon 9
------------------------------GTTATTTTTAATTTTGgtccaaaa-gtgtccatattcacaattttattgagacgaagataagtttctgttcatgtgcatagtgttgaagcaactgtgaccat--ttcctgcttctttgcag-----------------------------------------------------------
                              ||||||||| |||| ||||||||| |||| |||||| |||||||||| ||| | ||||||||||||  |||| |||||||     | |     ||   | ||   |     ||  | || |                                                           
ATTGCTAACTGCTATgtatttcatttgcaggttattttttatttcggtccaaaaagtgtgcatattgacaattttatagaggcaaagataagtttccattcacgtgcatacaaaggcaatgtttggtgctataggtagaaattggtagctgatataaaggtttctgtcaaaacttatttaatttgatttgcatgtggacgggtgtttcag

upper sequence: Vv12s0055g00360.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G15200.4 (Arabidopsis thaliana), 5'ss of exon 9
GTTATTTTTAATTTTGgtccaaaa-gtgtccatattcacaattttattgagacgaagataagtttctgttcatgtgcatagtgttgaagcaactgtgaccatttcctgc--ttctttgcag-----------------------------------------------------------
    ||||| |||| ||||||||| |||| |||||| |||||||||| ||| | ||||||||||||  |||| |||||||     | |     ||   | ||     |   ||  | || |                                                           
----TTTTTTATTTCGGTCCAAAAAGTGTGCATATTGACAATTTTATAGAGGCAAAGATAAGTTTCCATTCACGTGCATACAAAGGCAATGTTTGGTGCTATAGgtagaaattggtagctgatataaaggtttctgtcaaaacttatttaatttgatttgcatgtggacgggtgtttcag