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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAAGCACTGGGATTCCTTTTACAAGTTCTATAGGAACACCACTGATAACAAgtatggtcaatatcatttgaccgtttctgatctctttacaatgaaattcttatatttttaaattgttatcaatcaacatgttattattttctttatccatgaaatatgttgaatcgtttgaaatgcttgaacttgtcgcattctaaagacgctgttgatttatcttag

Basic information

species Vitis vinifera
transcript Vv12s0035g01750.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0035g01750.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA17G00490.1 (Glycine max), 5'ss of exon 5
GCTAAGCACTGGGATTCCTTTTACAAGTTCTATAGGAACACCACTGATAACAAgtatggtcaatatcatttgaccgtttctgatctctttacaatgaaattcttatatttttaaattgttatcaatcaacatgttattattttct-ttatccatgaaatatgttgaatcgtttgaaatgcttgaacttgtcgcattctaaagacgctgttgatttatcttag
|||| ||||||||||||||| ||||  || || |||||||| |||||||||||||||| |       | | || | ||     | |  ||  ||  |||     |  ||  |    ||  |    |  |  ||| | |||||  | ||||   ||   ||     |                                                        
GCTAGGCACTGGGATTCCTTCTACACTTTTTACAGGAACACAACTGATAACAAgtatgtt--gccctaatggaaccttcaaattttgatttgaaaaaaagaaaaagtttgatggtatgggaatggttgaagtgtcagtatttagtattattgttggtctactgacag-------------------------------------------------------

upper sequence: Vv12s0035g01750.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA17G00490.2 (Glycine max), 5'ss of exon 5
GCTAAGCACTGGGATTCCTTTTACAAGTTCTATAGGAACACCACTGATAACAAgtatggtcaatatcatttgaccgtttctgatctctttacaatgaaattcttatatttttaaattgttatcaatcaacatgttattattttct-ttatccatgaaatatgttgaatcgtttgaaatgcttgaacttgtcgcattctaaagacgctgttgatttatcttag
     ||||||||||||||| ||||  || || |||||||| |||||||||||||||| |       | | || | ||     | |  ||  ||  |||     |  ||  |    ||  |    |  |  ||| | |||||  | ||||   ||   ||     |                                                        
-----GCACTGGGATTCCTTCTACACTTTTTACAGGAACACAACTGATAACAAgtatgtt--gccctaatggaaccttcaaattttgatttgaaaaaaagaaaaagtttgatggtatgggaatggttgaagtgtcagtatttagtattattgttggtctactgacag-------------------------------------------------------

upper sequence: Vv12s0035g01750.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA07G40290.3 (Glycine max), 5'ss of exon 5
GCTAAGCACTGGGATTCCTTTTACAAGTTCTATAGGAACACCACTGATAACAAgtatggtcaatatcatttgaccgt----ttctgatctctttacaatgaaattcttat-atttttaaattgtt-atcaatcaacatgttattattttctttatccatgaaatatgttgaatcgtttgaaatgcttgaacttgtcgcattctaaagacgctgttgatttatcttag
|||| ||||||||||||||| |||   || || |||||||| |||||||||||||||| |     | ||   ||| |    || |||| |    | ||  ||| | | || |  |   ||| ||| | |  |||  || |  |  | || ||| || |   |                                                                 
GCTAGGCACTGGGATTCCTTCTACTCTTTTTACAGGAACACAACTGATAACAAgtatg-ttgccctaatggaaccttcaaattttgatttga--aaaaaaaaagtttgatgacatgggaatggttgaactgtcagtatttagtattgttgtttgtctactgacag--------------------------------------------------------------

upper sequence: Vv12s0035g01750.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT2G23390.1 (Arabidopsis thaliana), 5'ss of exon 8
GCTAAGCACTGGGATTCCTTTTACAAGTTCTATAGGAACACCACTGATAACAAgtatggtcaatatcatttgaccgtttctgatctctttacaatgaaattcttatatttttaaattgttatcaatcaacatgttattatt---ttctttatccatgaaatatgt-tgaatcgtttgaaatgcttgaacttgtcgcattctaaagacgctgttgatttatcttag
|||| ||||||||||||||| ||  | ||||| |||||||| ||||||||||||| | |||  |||| ||    | ||| || | |  |||  || |  | |  ||  | |    ||||    ||| |||||  |   |||   ||   | ||   |  |  ||| || ||    ||   || |||  ||| || ||| || ||     |   |  | || ||||
GCTAGGCACTGGGATTCCTTCTATGATTTCTACAGGAACACAACTGATAACAAgtttagtctttatctttgagacatttttgtttttcttatcattag-tacacattatgtgtctttgtgcataataaacatacttacattcaattacctgtcatcgtcaagtgtatgcattacctg---tgtttgtcctt-tcacatgcttaacg-atttccggctaattttag