Sequence
atgc intronic sequence ATGC exonic sequenceTAGCGGTTGGAAAGTTGTTGCAAGTTTTGAAGGCAATTTCCCCAACAGGATCAAGCAGCTACCTTTAGATAAACATTTTGATATAAACAATGTCAAAAGAgtatggttctcttttattcacattccaacttttgtgccttttaaatatgttgttgtaaggcctttattgtttgcaatgttccttttcaattgataccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0035g01740.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os02g50550.1 (Oryza sativa), 5'ss of exon 9
TAGCGGTTGGAAAGTTGTTGCAAGTTTTGAAGGCAATTTCCCCAACAGGATCAAGCAGCTACCTTTAGATAAACATTTTGATATAAACAATGTCAAAAGAgtatggttctcttttattcacattccaacttttgtgccttttaaatatgttgttgtaaggcctttattgtttgcaatgttccttttcaattgataccag
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GTCTGGTTGGAAAATTGTTGCAAGCTTTGAGGGGAAGTTTCCAGATAGGATCAAACAGCTTCCTTTGGACAGGCATTTTGATATTAACAATGTCAAAAGGgtaaattcaaaagcccttctagaattaattttagag---tgggcacactttgct-tatgatgattactgtt----atctttatattctag---------
upper sequence: Vv12s0035g01740.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os08g32920.1 (Oryza sativa), 5'ss of exon 9
TAGCGGTTGGAAAGTTGTTGCAAGTTTTGAAGGCAATTTCCCCAACAGGATCAAGCAGCTACCTTTAGATAAACATTTTGATATAAACAATGTCAAAAGAgtatggttctcttttattcacattccaacttttgtgccttttaaatatgttgttgtaaggcctttattgtttgcaatgttccttttcaattgataccag
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TGGAGGTTGGAAAGTTGTTGCAAGCTTTGAGGGGAAGTTCCCAACCAGGATCAAACAACTCCCTCTGGACAAGCATTTTGATATGAAAAATGTGAAAAGGgta-attcggttattcttgaagcttctgttacttgactcatcaattgtatggttataat-caatagatattccttttg--cctttttcttttgtgccag
upper sequence: Vv12s0035g01740.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os06g13820.1 (Oryza sativa), 5'ss of exon 9
TAGCGGTTGGAAAGTTGTTGCAAGTTTTGAAGGCAATTTCCCCAACAGGATCAAGCAGCTACCTTTAGATAAACATTTTGATATAAACAATGTCAAAAGAgtatggttctcttttattcacattccaacttttgtgccttttaaatatgttgttgtaaggcctttattgtttgcaatgttccttttcaattgataccag
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GTCTGGTTGGAAAGTTGTTGCAAGTTTTGAAGGGAAATTCCCAGAGAGAATTAAACAGCTGCCACTGGACAGGCACTTTGACCTCAGCAATGTTAAAAGGgtaagattggatccagtt----tcaggattagtgctactatcaggcattttcccatcttttatgaacactgaacagtattctctgacattctag-----
upper sequence: Vv12s0035g01740.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G485898_T03 (Zea mays), 5'ss of exon 9
TAGCGGTTGGAAAGTTGTTGCAAGTTTTGAAGGCAATTTCCCCAACAGGATCAAGCAGCTACCTTTAGATAAACATTTTGATATAAACAATGTCAAAAGAgtatggttctcttttattcacattccaacttttgtgccttttaaatatgttgttgtaaggcctttattgtttgcaatgttccttttcaattgataccag
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TGCCGGTTGGAAAGTTGTTGCTAGTTTTGAGGGAAAGTTTCCAACTAGGATCAAACAACTACCTGTGGAAAAGCATTTTGATATGAAAAATGTCAAAAAGgta--atttagttgtacctaaaacataattaaagtcacctttacctgaacctgtccaaa-----ttgtgattacgacatcattttc---ttgatgttag
upper sequence: Vv12s0035g01740.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G157462_T01 (Zea mays), 5'ss of exon 9
TAGCGGTTGGAAAGTTGTTGCAAGTTTTGAAGGCAATTTCCCCAACAGGATCAAGCAGCTACCTTTAGATAAACATTTTGATATAAACAATGTCAAAAGAgtatggttctcttttattcacattccaacttttgtgccttttaaatatgttgttgtaaggcctttattgtttgcaatgttccttttcaattgataccag
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ATCTGGATGGAAAATTGTTGCAAGTTTTGAAGGCAAGTTTCCAGACAGAATTAAACAGCTACCGTTGGACCGACATTTCGATCTCAACAACGTCAAAAGGgtatgatcacttccaattttacattgagctctggttggcagttagcacatgattaaacacatttctctccacacaatag--------------------
upper sequence: Vv12s0035g01740.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA07G40300.1 (Glycine max), 5'ss of exon 9
TAGCGGTTGGAAAGTTGTTGCAAGTTTTGAAGGCAATTTCCCCAACAGGATCAAGCAGCTACCTTTAGATAAACATTTTGATATAAACAATGTCAAAAGAgtatgg-ttctctttt--attcacattccaacttttgtgcctttta----aatatgttgttgtaaggcctttattgtttg---caatgttcct-tttcaattgataccag
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TAATGGTTGGAAAGTTGTTGCTAGTTTTGAAGGGAATTTTCCTAACAGAATCAAGCAACTTCCTATCGACAGACACTTTGACATAAACAATGTCAAGAGGgtaaaccttctcccttgaatttgtcatattgtttaggtagaatttagttcattttattctcttgacacttgaggtgcttgcttctatattcccattttggcttatttcag
upper sequence: Vv12s0035g01740.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA17G00480.1 (Glycine max), 5'ss of exon 9
TAGCGGTTGGAAAGTTGTTGCAAGTTTTGAAGGCAATTTCCCCAACAGGATCAAGCAGCTACCTTTAGATAAACATTTTGATATAAACAATGTCAAAAGAgtatggttctcttttattcacattccaacttttgtgccttttaaatat-gttgttgtaaggcctttattgtttgcaatg-ttccttttcaattgataccag---------
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TAATGGTTGGAAAGTTGTTGCCAGTTTTGAAGGGAATTTTCCTAACAGAATCAAGCAACTTCCTATTGACAGACACTTTGACATAAACAATGTCAAGAGGgta-aatcttctcccttgaatttgtca--tattgtttaggtagaatatagttcatcttattctgttgacacttggggtgcttgcttctatattctcattttggctttcag
upper sequence: Vv12s0035g01740.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G10290.1 (Arabidopsis thaliana), 5'ss of exon 9
TAGCGGTTGGAAAGTTGTTGCAAGTTTTGAAGGCAATTTCCCCAACAGGATCAAGCAGCTACCTTTAGATAAACATTTTGATATAAACAATGTCAAAAGAgtatg-gttctcttttattc-acattccaacttttgt--gccttttaaatatgttgttgtaaggcctttattgtttgcaatgttccttttcaattgataccag
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AAGTGGTTGGAAAGTTGTTGCAAGTTTTGAAGGAAATTTCCCCAACCGTATCAAGCAGCTTCCATTGGATAGACATTTTGACCTGAACAATGTTAAAAGGgtgggtgtcttcttctgtcctaagtttctgcacgagacaagttttgagacttgatttgtcaaaatatctttgattttcag-----------------------
upper sequence: Vv12s0035g01740.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G59610.1 (Arabidopsis thaliana), 5'ss of exon 9
TAGCGGTTGGAAAGTTGTTGCAAGTTTTGAAGGCAATTTCCCCAACAGGATCAAGCAGCTACCTTTAGATAAACATTTTGATATAAACAATGTCAAAAGAgtatggttctcttttattcacattccaacttttgtgccttttaaatatgttgttgtaaggcctttattgtttgcaatgttccttttcaattgataccag
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AAGTGGTTGGAAAGTTGTTGCAAGTTTTGAAGGCAATTTCCCCAATCGTATCAAAAAGCTTCCGTTGGATAGACATTTTGACTTGAACAATGTCAAAAGGgtgggtttctgaatt-ttcctgcctcaaattgtataa-----acaagtaacggctttagac---tggagtgtgacagattgattttccaattgtttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30298644|gb|CB975438.1|CB975438EST: TCAAGCAGCTACCTTTAGATAAACATTTTGATATAAACAATGTCAAAAGA ATTGTGCTAGAAGCAGATGGTTATCAACCTTATCTTATATCTCCAGAAAGA
genomic: TCAAGCAGCTACCTTTAGATAAACATTTTGATATAAACAATGTCAAAAGAgtatggttct ... ttgataccagATTGTGCTAGAAGCAGATGGTTATCAACCTTATCTTATATCTCCAGAAAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAGCGGTTGGAAAGTTGTTGCAAGTTTTGAAGGCAATTTCCCCAACAGGATCAAGCAGCTACCTTTAGATAAACATTTTGATATAAACAATGTCAAAAGAgtatggttctcttttattcacattccaacttttgtgccttttaaatatgttgttgtaaggcctttattgtttgcaatgttccttttcaattgataccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT