Sequence
atgc intronic sequence ATGC exonic sequenceGTTCTTGGTACTCCAACTAGAGAAGAAATTCGATGTATGAACCCGAATTATACTGATTTCAGGTTTCCTCAGATCAAAGCTCATCCTTGGCACAAGgtatgccatttcctggtttcttcaatgatgtggtagtttcttaaatatttagcaataaggtagggaagatgtaatgagaacggattttatttaatgctct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0028g01810.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 9
GTTCTTGGTACTCCAACTAGAGAAGAAATTCGATGTATGAACCCGAATTATACTGATTTCAGGTTTCCTCAGATCAAAGCTCATCCTTGGCACAAGgtatgccatttcctggtttcttcaatgatgtggtagtttcttaaatatttagcaataaggtag-ggaagatgtaatgagaacggattttatttaatgctct----------------------------------------------------------------------
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GTTCTTGGTACTCCAACCCGTGAGGAAATACGATGCATGAACCCCAACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgta-gccatgttttcttatattggatcacctt----cctcataccattttacttgcagggcattgtaggccacttcaaaaccagtttctgcatcatgtttaatttgaaataaaaaaaatgtatctgcagctgcttaactgatccatctgttgttctttcgcttaccaccag
upper sequence: Vv12s0028g01810.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os05g11730.1 (Oryza sativa), 5'ss of exon 9
GTTCTTGGTACTCCAACTAGAGAAGAAATTCGATGTATGAACCCGAATTATACTGATTTCAGGTTTCCTCAGATCAAAGCTCATCCTTGGCACAAGgtatgc---catttcctggtttcttcaatgatgtggtagtt--tcttaaatatttagcaataaggtagggaagatgtaatgagaacggattttattta-atgctct------------------------------------------------------------------------------
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GTTCTTGGTACACCAACCCGTGAGGAAATACGTTGCATGAACCCGAACTATACAGAGTTTAGGTTTCCACAGATAAAAGCTCACCCTTGGCACAAGgtaagcatacaatcttatccatgttgagtcatatatcacgtcatcttttatagtttcctggacaactatgaaaatgtagctgggctcatttccaataatagattctggacaccagatagctttacaatgcaatgtataaataaggaggtgcatacaggtactgatttttctaacttctgcgtag
upper sequence: Vv12s0028g01810.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G472625_T01 (Zea mays), 5'ss of exon 9
GTTCTTGGTACTCCAACTAGAGAAGAAATTCGATGTATGAACCCGAATTATACTGATTTCAGGTTTCCTCAGATCAAAGCTCATCCTTGGCACAAGgtatgccatttcctggtttcttcaatgatgtggtagtttcttaaat---atttagcaataaggtagggaag--atgtaatgagaacggattttatttaatgctct
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GTTCTTGGTACTCCAACCCGTGAGGAGATACGATGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCGTGGCACAAGgtat----tcttatgttaaaatcatgtttctgtccacatctatgattccatttcaccagcagctactgtagttatatacttgtagcccacggtccaaaatgtta-
upper sequence: Vv12s0028g01810.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 9
GTTCTTGGTACTCCAACTAGAGAAGAAATTCGATGTATGAACCCGAATTATACTGATTTCAGGTTTCCTCAGATCAAAGCTCATCCTTGGCACAAGgtatgccatttcctggtttcttcaatgatgtggtagtttcttaaatatttagcaataaggtagggaagatgta--atgagaacggattttatttaatgctct-----------------------------------------------------------------------------------------------------
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GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtat-tcatatgttaaatcatgt--ttctgttcacatctattatccattttacctgcaggtactgtagttgtatacttgtagtccacagtccaaaatgttttcaaagggcgctgaagaacttgtttgcagatcatatcgaaactttgagctcagaatgcatcaattactaactgatgcctctactttccgttttatcctccag
upper sequence: Vv12s0028g01810.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA06G42840.1 (Glycine max), 5'ss of exon 9
GTTCTTGGTACTCCAACTAGAGAAGAAATTCGATGTATGAACCCGAATTATACTGATTTCAGGTTTCCTCAGATCAAAGCTCATCCTTGGCACAAGgta-tgccatttcctggtt-tcttcaatgatgtggtagtttcttaaatatttagcaataaggtagggaa-gatgtaatgagaacggattttatttaatgctct
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GTTCTTGGTACTCCGACTCGAGAGGAAATCCGTTGCATGAACCCAAATTATACAGATTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGgtaatggcatttctcatccatattccttttgatattcaacgcttgca-attggactttaaaatatggattaaaaagatgaaaaaataattttcaaaatcaa--
upper sequence: Vv12s0028g01810.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA12G33950.1 (Glycine max), 5'ss of exon 9
GTTCTTGGTACTCCAACTAGAGAAGAAATTCGATGTATGAACCCGAATTATACTGATTTCAGGTTTCCTCAGATCAAAGCTCATCCTTGGCACAAGgtatgccatttcctggtttcttcaatgatgtggtagtttcttaaatatttagcaataaggtagggaagatgtaatgagaacggattttatttaatgctct
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ATTCTTGGCACTCCTACTCGAGAAGAAATTCGATGCATGAATCCTAATTATACAGATTTCAGATTCCCCCATATCAAAGCTCATCCTTGGCATAAGgtaactgcgttccttgtcactccttttggcttttgttttataacaacgcttctactgatgcatct--ggtgcaacgatccatggttcag-----------
upper sequence: Vv12s0028g01810.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA12G15470.2 (Glycine max), 5'ss of exon 9
GTTCTTGGTACTCCAACTAGAGAAGAAATTCGATGTATGAACCCGAATTATACTGATTTCAGGTTTCCTCAGATCAAAGCTCATCCTTGGCACAAGgta-tgccatttcctggtt-tcttcaatgatgtggtagtttcttaaatatttagcaataaggtagggaa-gatgtaatgagaacggattttatttaatgctct
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GTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGgtaatgacatttctcatccatcctccttttgatattcatcacttgc-cattggactttaaaatggggattaaaaagatgaaaaaatagttgtcaaaatcaa--
upper sequence: Vv12s0028g01810.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA13G36570.1 (Glycine max), 5'ss of exon 8
GTTCTTGGTACTCCAACTAGAGAAGAAATTCGATGTATGAACCCGAATTATACTGATTTCAGGTTTCCTCAGATCAAAGCTCATCCTTGGCACAAGgtatgccatttcctggtttcttcaatgatgtggtagtttcttaaatatttagcaataaggta-------gggaagatgtaatgagaacggattttatttaatgctct---------
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ATTCTTGGCACTCCCACCCGAGAAGAAATTCGATGCATGAATCCTAATTATACAGATTTCAGATTCCCCCATATCAAAGCTCATCCTTGGCATAAGgtaactgcgtttcttgtcacttctttt-tgcttttgtttaataacagttcttccgagagcttttcttttgggggggcg-ggcactgatgcatttggtgcaacgatccatggttcag
upper sequence: Vv12s0028g01810.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G06390.1 (Arabidopsis thaliana), 5'ss of exon 9
GTTCTTGGTACTCCAACTAGAGAAGAAATTCGATGTATGAACCCGAATTATACTGATTTCAGGTTTCCTCAGATCAAAGCTCATCCTTGGCACAAGgtatgccatttcctggtttcttcaatgatgtggtagtttcttaaatatttagcaataaggta------gggaagatgtaatgagaacg--gattttatttaatgctct----------
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GTTCTTGGTACTCCAACTCGTGAAGAAATTCGATGTATGAACCCGAACTACACAGATTTTAGGTTCCCACAAATCAAAGCTCACCCTTGGCACAAGgtagttcatctcaccttttgttcc-tggttaagcaattactgaactcattacctacacagtatacattgaagcgattcatttatagcatcaaccatatactgtacccttgacctccag
upper sequence: Vv12s0028g01810.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT2G30980.1 (Arabidopsis thaliana), 5'ss of exon 9
GTTCTTGGTACTCCAACTAGAGAAGAAATTCGATGTATGAACCCGAATTATACTGATTTCAGGTTTCCTCAGATCAAAGCTCATCCTTGGCACAAGgta---------------tgccatttcctggtttcttc--aatgatgtggtagttt-cttaaatatttag-caataag-gtagggaagatgtaatgagaacggatt-ttatttaatgctct----
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GTTCTTGGTACTCCAACTCGCGAAGAAATCCGGTGCATGAACCCAAACTACACAGACTTCAGATTCCCACAAATCAAAGCCCACCCTTGGCATAAGgtaatatatatatatgcatgtcactttcgaacttctttctaatcatacaattgcttacttctctacctaaacaacattcatggaaaagaagctaacacggtgcacaactgctctatgacctccag
upper sequence: Vv12s0028g01810.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: PP1S74_168V6.1 (Physcomitrella patens), 5'ss of exon 8
GTTCTTGGTACTCCAACTAGAGAAGAAATTCGATGTATGAACCCGAATTATACTGATTTCAGGTTTCCTCAGATCAAAGCTCATCCTTGGCACAAGgtatgccatttcctggtttcttcaat--gatgtggtagtttcttaaatatttagcaataaggtag-ggaagatgtaatgagaacggattttatttaatgctct
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GTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAGgtacggctggtctgtgtgttagtggtctggtatggt-gctttggagatgtactgtaacagttgattggaaagcgttacctgtattcataataac-ggtgatt-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110711443|gb|EE087924.1|EE087924EST: ATTATACTGATTTCAGGTTTCCTCAGATCAAAGCTCATCCTTGGCACAAG GTGTTTCACAAACGGATGCCTCCTGAAGCTCTTGATCTTGCTTCACGACTT
genomic: ATTATACTGATTTCAGGTTTCCTCAGATCAAAGCTCATCCTTGGCACAAGgtatgccatt ... tttgttttagGTGTTTCACAAACGGATGCCTCCTGAAGCTCTTGATCTTGCTTCACGACTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCTTGGTACTCCAACTAGAGAAGAAATTCGATGTATGAACCCGAATTATACTGATTTCAGGTTTCCTCAGATCAAAGCTCATCCTTGGCACAAGgtatgccatttcctggtttcttcaatgatgtggtagtttcttaaatatttagcaataaggtagggaagatgtaatgagaacggattttatttaatgctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgagaa