1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGGGCAGCTGGCCAAAGACATTGAGAAAATGTCTGATGAAGCTGCTGCTAATTTTGCTTTTATGCAACTCAAGAAGATCCTTCCTGAAGCTTCTGACCCGgtaatggttatagactttgctatttagcttttacaaacatataattcatcttttccaattacaatttttgagttgtcatgcctgaggccttcagcataat...
species | Vitis vinifera |
transcript | Vv12s0028g01120.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATTTTGCTTTTATGCAACTCAAGAAGATCCTTCCTGAAGCTTCTGACCCG ATTCAGTATCTTGTTTCTCGGTGGGGCACAGATGAGAATTCACTTGGATCCEST: gi|30303598|gb|CB980392.1|CB980392
genomic: ATTTTGCTTTTATGCAACTCAAGAAGATCCTTCCTGAAGCTTCTGACCCGgtaatggtta ... tttggtgcagATTCAGTATCTTGTTTCTCGGTGGGGCACAGATGAGAATTCACTTGGATCC
EST: ATTTTGCTTTTATGCAACTCAAGAAGATCCTTCCTGAAGCTTCTGACCCG ATTCAGTATCTTGTTTCTCGGTGGGGCACAGATGAGAATTCACTTGGATCCEST: gi|110361761|gb|EC925257.1|EC925257
genomic: ATTTTGCTTTTATGCAACTCAAGAAGATCCTTCCTGAAGCTTCTGACCCGgtaatggtta ... tttggtgcagATTCAGTATCTTGTTTCTCGGTGGGGCACAGATGAGAATTCACTTGGATCC
EST: ATTTTGCTTTTATGCAACTCAAGAAGATCCTTCCTGAAGCTTCTGACCCG ATTCAGTATCTTGTTTCTCGGTGGGGCACAGATGAGAATTCACTTGGATCCEST: gi|110718353|gb|EE095090.1|EE095090
genomic: ATTTTGCTTTTATGCAACTCAAGAAGATCCTTCCTGAAGCTTCTGACCCGgtaatggtta ... tttggtgcagATTCAGTATCTTGTTTCTCGGTGGGGCACAGATGAGAATTCACTTGGATCC
EST: ATTTTGCTTTTATGCAACTCAAGAAGATCCTTCCTGAAGCTTCTGACCCG ATTCAGTATCTTGTTTCTCGGTGGGGCACAGATGAGAATTCACTTGGATCCEST: gi|30131961|gb|CB917300.1|CB917300
genomic: ATTTTGCTTTTATGCAACTCAAGAAGATCCTTCCTGAAGCTTCTGACCCGgtaatggtta ... tttggtgcagATTCAGTATCTTGTTTCTCGGTGGGGCACAGATGAGAATTCACTTGGATCC
EST: GCTTTTATGCAACTCAAGAAGATCCTTCCTGAAGCTTCTGACCCG ATTCAGTATCTTGTTTCTCGGTGGGGCACAGATGAGAATTCACTTGGATCCEST: gi|110718889|gb|EE096234.1|EE096234
genomic: GCTTTTATGCAACTCAAGAAGATCCTTCCTGAAGCTTCTGACCCGgtaatggtta ... tttggtgcagATTCAGTATCTTGTTTCTCGGTGGGGCACAGATGAGAATTCACTTGGATCC
EST: ATTTTGCTTTTATGCAACTCAAGAAGATCCTTCCTGAAGCTTCTGACCCG ATTCAGTATCTTGTTTCTCGGTGGGGCACAGATGAGAATTCACTTGGATCCEST: gi|110377101|gb|EC942162.1|EC942162
genomic: ATTTTGCTTTTATGCAACTCAAGAAGATCCTTCCTGAAGCTTCTGACCCGgtaatggtta ... tttggtgcagATTCAGTATCTTGTTTCTCGGTGGGGCACAGATGAGAATTCACTTGGATCC
EST: ATTTTGCTTTTATGCAACTCAAGAAGATCCTTCCTGAAGCTTCTGACCCG ATTCAGTATCTTGTTTCTCGGTGGGGCACAGATGAGAATTCACTTGGATCCEST: gi|110388093|gb|EC952810.1|EC952810
genomic: ATTTTGCTTTTATGCAACTCAAGAAGATCCTTCCTGAAGCTTCTGACCCGgtaatggtta ... tttggtgcagATTCAGTATCTTGTTTCTCGGTGGGGCACAGATGAGAATTCACTTGGATCC
EST: ATTTTGCTTTTATGCAACTCAAGAAGATCCTTCCTGAAGCTTCTGACCCG ATTCAGTATCTTGTTTCTCGGTGGGGCACAGATGAGAATTCACTTGGATCCEST: gi|30133620|gb|CB918959.1|CB918959
genomic: ATTTTGCTTTTATGCAACTCAAGAAGATCCTTCCTGAAGCTTCTGACCCGgtaatggtta ... tttggtgcagATTCAGTATCTTGTTTCTCGGTGGGGCACAGATGAGAATTCACTTGGATCC
EST: ATTTTGCTTTTATGCAACTCAAGAAGATCCTTCCTGAAGCTTCTGACCCG ATTCAGTATCTTGTTTCTCGGTGGGGCACAGATGAGAATTCACTTGGATCCEST: gi|30135214|gb|CB920552.1|CB920552
genomic: ATTTTGCTTTTATGCAACTCAAGAAGATCCTTCCTGAAGCTTCTGACCCGgtaatggtta ... tttggtgcagATTCAGTATCTTGTTTCTCGGTGGGGCACAGATGAGAATTCACTTGGATCC
EST: GCTTTTATGCAACTCAAGAAGATCCTTCCTGAAGCTTCTGACCCG ATTCAGTATCTTGTTTCTCGGTGGGGCACAGATGAGAATTCACTTGGATCCEST: gi|110398802|gb|EC965277.1|EC965277
genomic: GCTTTTATGCAACTCAAGAAGATCCTTCCTGAAGCTTCTGACCCGgtaatggtta ... tttggtgcagATTCAGTATCTTGTTTCTCGGTGGGGCACAGATGAGAATTCACTTGGATCC
EST: ATTTTGCTTTTATGCAACTCAAGAAGATCCTTCCTGAAGCTTCTGACCCG ATTCAGTATCTTGTTTCTCGGTGGGGCACAGATGAGAATTCACTTGGATCCEST: gi|71884352|gb|DT033407.1|DT033407
genomic: ATTTTGCTTTTATGCAACTCAAGAAGATCCTTCCTGAAGCTTCTGACCCGgtaatggtta ... tttggtgcagATTCAGTATCTTGTTTCTCGGTGGGGCACAGATGAGAATTCACTTGGATCC
EST: ATTTTGCTTTTATGCAACTCAAGAAGATCCTTCCTGAAGCTTCTGACCCG ATTCAGTATCTTGTTTCTCGGTGGGGCACAGATGAGAATTCACTTGGATCC
genomic: ATTTTGCTTTTATGCAACTCAAGAAGATCCTTCCTGAAGCTTCTGACCCGgtaatggtta ... tttggtgcagATTCAGTATCTTGTTTCTCGGTGGGGCACAGATGAGAATTCACTTGGATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGCAGCTGGCCAAAGACATTGAGAAAATGTCTGATGAAGCTGCTGCTAATTTTGCTTTTATGCAACTCAAGAAGATCCTTCCTGAAGCTTCTGACCCGgtaatggttatagactttgctatttagcttttacaaacatataattcatcttttccaattacaatttttgagttgtcatgcctgaggccttcagcataat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacata