Sequence
atgc intronic sequence ATGC exonic sequenceAATGTGGACAATCAAAACCCCATTTCCGGAGAATCACAAGAAAACAGAGTTGTATTCACAGAGATGGAAGAATTTGTTTGGGGTCTTCAGCTTGAGGACGgtatgttccaccaaccctagctgttgaaagtgtggtgtcgaaatgtatgccttaagttttatttgctcaagatcaggtttaggggtcacatgagtaaacc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0078g00440.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA07G34600.1 (Glycine max), 5'ss of exon 9
AATGTGGACAATCAAAACCCCATTTCCGGAGAATCACAAGAAAACAGAGTTGTATTCACAGAGATGGAAGAATTTGTTTGGGGTCTTCAGCTTGAGGACGgtatgttccaccaaccctagctgttgaaagtgtggtgtcgaaat--gtatgccttaagttttatttgctcaagatcaggtttaggggtcacatgagtaaacc--
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GAGACTGATGATCAAAACCCTACAGCTGGAGAGTCACGAGAAAACAAGGTGGTCTTCACAGAGATGGAAGAATTTGTCTGGGGTCTCCACATTGATGAAGgtaatttttatatatg-tggttgtctaaataatgaatttcatactagagtattataagtatgactg--tccgtattaaatgtaaaagtgg-atcagttttcttt
upper sequence: Vv11s0078g00440.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G24660.1 (Glycine max), 5'ss of exon 9
AATGTGGACAATCAAAACCCCATTTCCGGAGAATCACAAGAAAACAGAGTTGTATTCACAGAGATGGAAGAATTTGTTTGGGGTCTTCAGCTTGAGGACGgtatgttccaccaaccctagctgttgaaagtgtggtgtcgaaatgtatgccttaagttttatttgctcaagatcaggtttaggggtcacatgagtaaacc-----
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GAGACTGATGATCAAAACCCTACAGCTGGAGAGTCACGAGAAAACAAGGTGGTCTTCACAGAGATGGAAGAATTTGTCTGGGGTCTCCACATTGATGAAGgtaatttttatttatg-tggttgtctaaataatgaatttcactagagtattataagtatgactg--tcatgattaaatttaaaag--ggatcagttttcttttta
upper sequence: Vv11s0078g00440.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA15G29960.2 (Glycine max), 5'ss of exon 5
AATGTGGACAATCAAAACCCCATTTCCGGAGAATCACAAGAAAACAGAGTTGTATTCACAGAGATGGAAGAATTTGTTTGGGGTCTTCAGCTTGAGGACGgtatgttccaccaaccctagctgttgaaagtgtg-gtgtcgaaat-gtatgccttaagttttatttgctcaagatcaggtttaggggtcacatgagtaaacc--
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GAGACTGATGATCAAAACCCTACAGCTGGAGAGTCACGAGAAAACAAGGTGGTCTTCACAGAGATGGAAGAATTTGTCTGGAGTCTCCACATTGATGAAGgtaatttttatttgtg-tggttgtctaaataatgagtttcatggtagagtattataagtatgattgtcct--gattaaatgtaaaagtgg-atcagttttttttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37190017|gb|CF609366.1|CF609366EST: TGTATTCACAGAGATGGAAGAATTTGTTTGGGGTCTTCAGCTTGAGGACG AAGCCCATAAGCCTGATGGTGAAGATGTTTTCATGGATGAAGATGAAGCAC
genomic: TGTATTCACAGAGATGGAAGAATTTGTTTGGGGTCTTCAGCTTGAGGACGgtatgttcca ... gccttttcagAAGCCCATAAGCCTGATGGTGAAGATGTTTTCATGGATGAAGATGAAGCAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATGTGGACAATCAAAACCCCATTTCCGGAGAATCACAAGAAAACAGAGTTGTATTCACAGAGATGGAAGAATTTGTTTGGGGTCTTCAGCTTGAGGACGgtatgttccaccaaccctagctgttgaaagtgtggtgtcgaaatgtatgccttaagttttatttgctcaagatcaggtttaggggtcacatgagtaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagtaaa