Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAAATGATTCAAGGCCTTACCCAAGTACCTTGGGAACGTGTGGATGTTAGCTTTCACAAAAGTAGGCAACGATATGTTGCACATAATACCATTCAGgcaagttcttttactggatggctttgcttgagtttgtacaatttatttttttgcctataatcaacttatgatgttaaatattccatgtggttttggtgct...

Basic information

species Vitis vinifera
transcript Vv11s0052g01660.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0052g01660.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os08g34750.2 (Oryza sativa), 5'ss of exon 8
--AGGAAATGATTCAAGGCCTTACCCAAGTACCTTGGGAACGTGTGGATGTTAGCTTTCACAAAAGTAGGCAACGATATGTTGCACATAATACCATTCAGgcaagttctt-ttactggatggctttgc----ttgagtttgtacaat-ttatttttttgcctataatcaacttatgatgttaaatattccatgtggttttggtgct
  |||| ||||||  ||||||||| |||||||| ||||||||||| ||||| ||||| || |||||||| ||| |||  ||||| ||||| ||||| ||||   |  ||| |||||         |||    |  | ||||  |||  |  | || ||  |||       || |  || || ||||    ||   |   ||     
AGAGGAGATGATTAGAGGCCTTACACAAGTACCGTGGGAACGTGTTGATGTGAGCTTCCAGAAAAGTAGTCAAAGATTGGTTGCGCATAACACCATCCAGgtgtgaacttattacttttccaacctgcagtatatattttgagcaaagtcgtcttcttttctactggtgcctga-aattttgaatagataattgcggagtg-----

upper sequence: Vv11s0052g01660.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os08g34750.1 (Oryza sativa), 5'ss of exon 9
AGGAAATGATTCAAGGCCTTACCCAAGTACCTTGGGAACGTGTGGATGTTAGCTTTCACAAAAGTAGGCAACGATATGTTGCACATAATACCATTCAGgcaagttctt-ttactggatggctttgc----ttgagtttgtacaat-ttatttttttgcctataatcaacttatgatgttaaatattccatgtggttttggtgct
|||| ||||||  ||||||||| |||||||| ||||||||||| ||||| ||||| || |||||||| ||| |||  ||||| ||||| ||||| ||||   |  ||| |||||         |||    |  | ||||  |||  |  | || ||  |||       || |  || || ||||    ||   |   ||     
AGGAGATGATTAGAGGCCTTACACAAGTACCGTGGGAACGTGTTGATGTGAGCTTCCAGAAAAGTAGTCAAAGATTGGTTGCGCATAACACCATCCAGgtgtgaacttattacttttccaacctgcagtatatattttgagcaaagtcgtcttcttttctactggtgcctga-aattttgaatagataattgcggagtg-----

upper sequence: Vv11s0052g01660.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA04G20400.2 (Glycine max), 5'ss of exon 10
AGGAAATGATTCAAGGCCTTACCCAAGTACCTTGGGAACGTGTGGATGTTAGCTTTCACAAAAGTAGGCAACGATATGTTGCACATAATACCATTCAGgcaa---gttctt-ttactggatggctttgc-ttgagtttgtaca-atttatttttttgcctataatcaacttatgatgt--taaatattccatgtggttttggtgct---------------------------------------------------------------------------------
|||| |||||    || || || || ||| ||||||| |||||||||||||||||||| |||||||  |||||||| ||||| || | ||| ||||||| ||    || || ||| || | |      | || | |    | | |  |  ||  ||     |  | || |||| ||||  |||| |||   | |  |||      |                                                                                 
AGGAGATGATAAGGGGGCTCACTCAGGTATCTTGGGAGCGTGTGGATGTTAGCTTTCAGAAAAGTAAACAACGATACGTTGCTCACAGTACAATTCAGgtaacacattattattattgaaagaagaaacattaaatccaaatatacatgcttacttaaactttttgaaattatcatgtcttaaacatttt-tctcatttaaacaataaacatatacaaaaatacaaaaaacttaatagcataaaactaaagcaaaatatagtatgagtctttactattagttgaaag

upper sequence: Vv11s0052g01660.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT4G25770.1 (Arabidopsis thaliana), 5'ss of exon 9
AGGAAATGATTCAAGGCCTTACCCAAGTACCTTGGGAACGTGTGGATGTTAGCTTTCACAAAAGTAGGCAACGATATGTTGCACATAATACCATTCAGgcaagttcttttactggatggctttgcttgagtttgtacaatttatttttttgcctataatcaacttatgatgttaaatattccatgtggttttggtgct
|||||||||| || || || |  ||| || |||||||| | || ||||| ||||||||||| || | ||||||||| || || |||| |||||| ||||||||||   | |   ||        ||  |   |  | ||   ||||| ||      | |  ||  || || ||   | |    ||| |          
AGGAAATGATACATGGACTCAGTCAACTATCTTGGGAAAGAGTAGATGTCAGCTTTCACAATAGCAAGCAACGATACGTCGCGCATAGTACCATCCAGgcaagtttaatgataaga-------actcaaaact-caaaagcgattttgttaagagcatttgac--ataattttccctgtaatgtgtag----------