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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTAATGTGGCTGTGAGGAAGGAGCTTCATACCCCTGCATCCGATCGTTCTTGTACGCATCTGGAATTCGACATATCTGGCACTGGACTTACgtaagttgcttttctgaatcatttcaatctgaatatgttcttgtaatgggggtggttatgacattttttgctaatttattttattttgttgtttattgaaaacaaatgtgaattctttaggcatgtatttactcttggcctctttgacctcag

Basic information

species Vitis vinifera
transcript Vv11s0052g00880.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0052g00880.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA17G07050.2 (Glycine max), 5'ss of exon 9
AGCTAATGTGGCTGTGAGGAAGGAGCTTCATACCCCTGCATCCGATCGTTCTTGTACGCATCTGGAATTCGACATATCTGGCACTGGACTTACgtaagttgcttttctgaatcatttcaatctgaatatgttcttgtaatgggggtggttatgacattttttgctaatttattttattttgttgtttattgaaaacaaatgtgaattctttaggcatgtatttactcttggcctctttgacctcag
 || |||||||||||||| |||||||||||||| |||||||| ||||| ||||| || ||| ||||||| ||||| || ||||||||| ||||||||||    |  |||    | |  || ||| | |     || | ||       |||   |||||||        ||||  | |||| ||    |                                                          
GGCAAATGTGGCTGTGAGAAAGGAGCTTCATACTCCTGCATCTGATCGATCTTGCACTCATTTGGAATTTGACATTTCAGGCACTGGAGTTACgtaagt-atctgcctgtggaagtataa-ctgcaaaaaaaatttttatatataatgttcctacattttccttgttcttatgctgttttatttcacag---------------------------------------------------------

upper sequence: Vv11s0052g00880.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA13G00990.1 (Glycine max), 5'ss of exon 9
AGCTAATGTGGCTGTGAGGAAGGAGCTTCATACCCCTGCATCCGATCGTTCTTGTACGCATCTGGAATTCGACATATCTGGCACTGGACTTACgtaagttgcttttctgaatcatttcaatctgaatatgttcttgtaatgggggtggttatgacattttttgctaatttattttattttgttgtttattgaaaacaaatgtgaattctttaggcatgtatttactcttggcctctttgacctcag
 || |||||||||||||| |||||||||||||| |||||||| ||||| ||||| || ||| ||||||| ||||| || ||||| ||| ||||||||||  ||  |       || | | | |  | ||    ||||        || || | |||||||        ||||  | |||| ||                                                               
GGCAAATGTGGCTGTGAGAAAGGAGCTTCATACTCCTGCATCTGATCGATCTTGCACTCATTTGGAATTTGACATTTCAGGCACGGGAGTTACgtaagtatctgcttgtggaaatataactgtagaaatacatttgtttatataatg-ttcttacattttccttgttcttatgctgtttttttcacag----------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71856704|gb|DT005759.1|DT005759
EST:     GATCGTTCTTGTACGCATCTGGAATTCGACATATCTGGCACTGGACTTAC                         ATATGAAACAGGAGATCATGTTGGTGTGTACTGTGAGAATCTGCCTGAAAC
genomic: GATCGTTCTTGTACGCATCTGGAATTCGACATATCTGGCACTGGACTTACgtaagttgct ... ttgacctcagATATGAAACAGGAGATCATGTTGGTGTGTACTGTGAGAATCTGCCTGAAAC
EST: gi|71862920|gb|DT011975.1|DT011975
EST:     GATCGTTCTTGTACACATCTGGAATTCGACATATCTGGCACTGGACTTAC                         ATATGAAACAGGAGATCATGTTGGTGTGTACTGTGAGAATCTGCCTGAAAC
genomic: GATCGTTCTTGTACGCATCTGGAATTCGACATATCTGGCACTGGACTTACgtaagttgct ... ttgacctcagATATGAAACAGGAGATCATGTTGGTGTGTACTGTGAGAATCTGCCTGAAAC
EST: gi|71865093|gb|DT014148.1|DT014148
EST:     GATCGTTCTTGTACACATCTGGAATTCGACATATCTGGCACTGGACTTAC                         ATATGAAACAGGAGATCATGTTGGTGTGTACTGTGAGAATCTGCCTGAAAC
genomic: GATCGTTCTTGTACGCATCTGGAATTCGACATATCTGGCACTGGACTTACgtaagttgct ... ttgacctcagATATGAAACAGGAGATCATGTTGGTGTGTACTGTGAGAATCTGCCTGAAAC
EST: gi|30300181|gb|CB976975.1|CB976975
EST:     GTTCTTGTACGCATCTGGAATTCGACATATCTGGCACTGGACTTAC                         ATATGAAACAGGAGATCATGTTGGTGTGTACTGTGAGAATCTGCCTGAAAC
genomic: GTTCTTGTACGCATCTGGAATTCGACATATCTGGCACTGGACTTACgtaagttgct ... ttgacctcagATATGAAACAGGAGATCATGTTGGTGTGTACTGTGAGAATCTGCCTGAAAC
EST: gi|71861275|gb|DT010330.1|DT010330
EST:     GATCGTTCTTGTACACATCTGGAATTCGACATATCTGGCACTGGACTTAC                         ATATGAAACAGGAGATCATGTTGGTGTGTACTGTGAGAATCTGCCTGAAAC
genomic: GATCGTTCTTGTACGCATCTGGAATTCGACATATCTGGCACTGGACTTACgtaagttgct ... ttgacctcagATATGAAACAGGAGATCATGTTGGTGTGTACTGTGAGAATCTGCCTGAAAC