1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTGCTTTTGCCTCAGATTGTTTCAACCTTCAGTGCAGATAAGTCAGTTAATGAGATTATAGAAGAGCTGAAAAAGCATCAGCTTAGCACTGATGCTATAGgtaagctactttacaccattctttttatggtagatcagctcggtgccttggacatcttctcctactcaatctagtaatgttggcatctagttcttgcttcagctcatttcatccatcattttgattgccattgtttccatgaacag
species | Vitis vinifera |
transcript | Vv11s0016g04290.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TGAGATTATAGAAGAGCTGAAAAAGCATCAGCTTAGCACTGATGCTATAG TGTCAGAGTGGGCTAAGGAAGCCCTTTTAGGTCTTGGAAAGGGGGCTCCTTEST: gi|110363815|gb|EC927434.1|EC927434
genomic: TGAGATTATAGAAGAGCTGAAAAAGCATCAGCTTAGCACTGATGCTATAGgtaagctact ... ccatgaacagTGTCAGAGTGGGCTAAGGAAGCCCTTTTAGGTCTTGGAAAGGGGGCTCCTT
EST: TGAGATTATAGAAGAGCTGAAAAAGCATCAGCTTAGCACTGATGCTATAG TGTCAGAGTGGGCTAAGGAAGCCCTTTTAGGTCTTGGAAAGGGGGCTCCTTEST: gi|110399519|gb|EC966027.1|EC966027
genomic: TGAGATTATAGAAGAGCTGAAAAAGCATCAGCTTAGCACTGATGCTATAGgtaagctact ... ccatgaacagTGTCAGAGTGGGCTAAGGAAGCCCTTTTAGGTCTTGGAAAGGGGGCTCCTT
EST: TGAGATTATAGAAGAGCTGAAAAAGCATCAGCTTAGCACTGATGCTATAG TGTCAGAGTGGGCTAAGGAAGCCCTTTTAGGTCTTGGAAAGGGGGCTCCTT
genomic: TGAGATTATAGAAGAGCTGAAAAAGCATCAGCTTAGCACTGATGCTATAGgtaagctact ... ccatgaacagTGTCAGAGTGGGCTAAGGAAGCCCTTTTAGGTCTTGGAAAGGGGGCTCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCTTTTGCCTCAGATTGTTTCAACCTTCAGTGCAGATAAGTCAGTTAATGAGATTATAGAAGAGCTGAAAAAGCATCAGCTTAGCACTGATGCTATAGgtaagctactttacaccattctttttatggtagatcagctcggtgccttggacatcttctcctactcaatctagtaatgttggcatctagttcttgcttcagctcatttcatccatcattttgattgccattgtttccatgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT