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GTCCCCTGTGTTGCTGTTGTTGAGAATATGTGTCACTTTGATGCTGATGGCAAGCGATATTACCCATTTGGCAGGGGTTCAGGCTCTCAGgtactgacctgagaccacatttattcttgcttgctttacaagaattttgaaaaatctcaatgctggaattggttctaatctggttaaaccaaagaaacct...
species | Vitis vinifera |
transcript | Vv11s0016g04250.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATGCTGATGGCAAGCGATATTACCCATTTGGCAGGGGTTCAGGCTCTCAG GTTGTCCAGCAGTTCGGAATTCCCCATCTGTTTGATCTTCCCATTAGACCAEST: gi|110718478|gb|EE095359.1|EE095359
genomic: ATGCTGATGGCAAGCGATATTACCCATTTGGCAGGGGTTCAGGCTCTCAGgtactgacct ... atcttaacagGTTGTCCAGCAGTTCGGAATTCCCCATCTGTTTGATCTTCCCATTAGACCA
EST: ATGCTGATGGCAAGCGGTATTACCCATTTGGCAGGGGTTCAGGCTCTCAG GTTGTCCAGCAGTTCGGAATTCCCCATCTGTTTGATCTTCCCATTAGACCAEST: gi|30328118|gb|CD011380.1|CD011380
genomic: ATGCTGATGGCAAGCGATATTACCCATTTGGCAGGGGTTCAGGCTCTCAGgtactgacct ... atcttaacagGTTGTCCAGCAGTTCGGAATTCCCCATCTGTTTGATCTTCCCATTAGACCA
EST: ATGCTGATGGCAAGCGATATTACCCATTTGGCAGGGGTTCAGGCTCTCAG GTTGTCCAGCAGTTCGGAATTCCCCATCTGTTTGATCTTCCCATTAGACCAEST: gi|32269673|gb|CD718832.1|CD718832
genomic: ATGCTGATGGCAAGCGATATTACCCATTTGGCAGGGGTTCAGGCTCTCAGgtactgacct ... atcttaacagGTTGTCCAGCAGTTCGGAATTCCCCATCTGTTTGATCTTCCCATTAGACCA
EST: ATGCTGATGGCAAGCGATATTACCCATTTGGCAGGGGTTCAGGCTCTCAG GTTGTCCAGCAGTTCGGAATTCCCCATCTGTTTGATCTTCCCATTAGACCA
genomic: ATGCTGATGGCAAGCGATATTACCCATTTGGCAGGGGTTCAGGCTCTCAGgtactgacct ... atcttaacagGTTGTCCAGCAGTTCGGAATTCCCCATCTGTTTGATCTTCCCATTAGACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCCCTGTGTTGCTGTTGTTGAGAATATGTGTCACTTTGATGCTGATGGCAAGCGATATTACCCATTTGGCAGGGGTTCAGGCTCTCAGgtactgacctgagaccacatttattcttgcttgctttacaagaattttgaaaaatctcaatgctggaattggttctaatctggttaaaccaaagaaacct
- - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaa