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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCTgtaaggcctcttgcaagtatttgaattttatgtaattgcaatgttggtaattggagatgataattgtttcttaaaggttgtttcatagttccataattcc...

Basic information

species Vitis vinifera
transcript Vv11s0016g03200.t01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32459007|gb|CD800181.1|CD800181
EST:     GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCT                         ATTGCCTACTTTGTGGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
genomic: GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCTgtaaggcctc ... tcttgtgcagATTGCCTACTTTGTGGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
EST: gi|110727031|gb|EE103356.1|EE103356
EST:     GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCT                         ATTGCCTACTTTGTGGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
genomic: GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCTgtaaggcctc ... tcttgtgcagATTGCCTACTTTGTGGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
EST: gi|45771236|gb|CN007088.1|CN007088
EST:     GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCT                         ATTGCCTACTTTGTGGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
genomic: GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCTgtaaggcctc ... tcttgtgcagATTGCCTACTTTGTGGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
EST: gi|83275538|gb|DV939546.1|DV939546
EST:     GTCCACATTGCACCGGGTTGTAGTGCATGGTCCAGAGAGATATTCT                         ATTGCCTACTTTGTAGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
genomic: GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCTgtaaggcctc ... tcttgtgcagATTGCCTACTTTGTGGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
EST: gi|110428851|gb|EC995334.1|EC995334
EST:     GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCT                         ATTGCCTACTTTGTGGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
genomic: GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCTgtaaggcctc ... tcttgtgcagATTGCCTACTTTGTGGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
EST: gi|83276122|gb|DV940130.1|DV940130
EST:     GTCCACATTGCACCGGGTTTTAGTGCATGGTCCAGAGAGATATTCT                         ATTGCCTACTTTGTAGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
genomic: GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCTgtaaggcctc ... tcttgtgcagATTGCCTACTTTGTGGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
EST: gi|110390246|gb|EC955146.1|EC955146
EST:     GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCT                         ATTGCCTACTTTGTGGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
genomic: GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCTgtaaggcctc ... tcttgtgcagATTGCCTACTTTGTGGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
EST: gi|30253347|gb|CB970898.1|CB970898
EST:     GTCCACATTGCACCGGGTTTTAGTGCATGGTCCAGAGAGATATTCT                         ATTGCCTACTTTGTGGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
genomic: GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCTgtaaggcctc ... tcttgtgcagATTGCCTACTTTGTGGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
EST: gi|71887181|gb|DT036236.1|DT036236
EST:     GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCT                         ATTGCCTACTTTGTAGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
genomic: GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCTgtaaggcctc ... tcttgtgcagATTGCCTACTTTGTGGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
EST: gi|77589174|gb|DV223847.1|DV223847
EST:     GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCT                         ATTGCCTACTTTGTAGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
genomic: GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCTgtaaggcctc ... tcttgtgcagATTGCCTACTTTGTGGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
EST: gi|83275983|gb|DV939991.1|DV939991
EST:     GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCT                         ATTGCCTACTTTGTGGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
genomic: GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCTgtaaggcctc ... tcttgtgcagATTGCCTACTTTGTGGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
EST: gi|71884795|gb|DT033850.1|DT033850
EST:     GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCT                         ATTGCCTACTTTGTAGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
genomic: GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCTgtaaggcctc ... tcttgtgcagATTGCCTACTTTGTGGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
EST: gi|30253270|gb|CB970821.1|CB970821
EST:     GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCT                         ATTGCCTACTTTGTGGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
genomic: GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCTgtaaggcctc ... tcttgtgcagATTGCCTACTTTGTGGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
EST: gi|110421097|gb|EC987385.1|EC987385
EST:     GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCT                         ATTGCCTACTTTGTGGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
genomic: GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCTgtaaggcctc ... tcttgtgcagATTGCCTACTTTGTGGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
EST: gi|71884047|gb|DT033102.1|DT033102
EST:     GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCT                         ATTGCCTACTTTGTAGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA
genomic: GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCTgtaaggcctc ... tcttgtgcagATTGCCTACTTTGTGGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCCACATTGCACCGGGTTCTAGTGCATGGTCCAGAGAGATATTCTgtaaggcctcttgcaagtatttgaattttatgtaattgcaatgttggtaattggagatgataattgtttcttaaaggttgtttcatagttccataattcc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggagatga