Sequence
atgc intronic sequence ATGC exonic sequenceATGCATGCGGATGATTTCAGAAATGATAATTATGGAGTGGTTTCGGGACTTCGAGACGGTGGATACTCTGATGACATGACTCTTGCAGCAATTGCTGgtaatgctttgatctaccttattttctttgtcacatttattgaaccagtttatctgtggacctttatttctgcctgtttgatgttatgtgtttgaccaat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g03130.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA01G01130.1 (Glycine max), 5'ss of exon 8
---ATGCATGCGGATGATTTCAGAAATGATAATTATGGAGTGGTTTCGGGACTTCGAGACGGTGGATACTCTGATGACATGACTCTTGCAGCAATTGCTGgta------atgct--ttgatctaccttattttctttgtcacatttattgaaccagtttatctgtggacctttatttc-tgcctgtttgatgttat----gtgtttgaccaat-----------------------------------------------------------------
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CAGATGCATTCTGAAGACTTCAGGCAAGATAATTGTGGTGTAGTCTCGGGACTTCGAGATGGTGGATATTCTGATGATATGACTCTTGCAGCCATAGCTGgtatatctgatactcatcaatcttttaaattcacactttgaaaatcaatgatgcaacagctttgccagcattcaactagcatagacttagtctttttgcaatatatattcaatgttttttcttggtcgttcattcctctttattatgttttctattgccatgatactgtcacattcag
upper sequence: Vv11s0016g03130.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA16G08510.1 (Glycine max), 5'ss of exon 8
---ATGCATGCGGATGATTTCAGAAATGATAATTATGGAGTGGTTTCGGGACTTCGAGACGGTGGATACTCTGATGACATGACTCTTGCAGCAATTGCTGgtaatgctttgatctaccttattttctttg--tcacatttattgaaccagtttatctgtggacct--ttatttctgcctgtttgatgttatgtgtttgaccaat----------------------------------------------------------------------------
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CAGATGCATTCTGAAGACTTCAGGCAAGATAATTGTGGTATAGTCTCGGCACTTCGAGACGGTGGATATTCTGATGATATGACTCTTGCAGCCATAGCTGgtatatctttgatactcaacaatcttttaaattcacactttgagaattaatgatgctacagctttgctagcattcaactagcatagacttagtcttttcgcaatatatattcaatgttttttcttggtcattcattcctgtttattatggcgttcattgccatgatactgttacgttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294965468|gb|GW839039.1|GW839039EST: ACTTCGAGACGGTGGATACTCTGATGACATGACTCTTGCAGCAATTGCTG GGAATCATAAGAGGCTGATTACATCTCCGCCAGTTGCCGTCTTTCCTCACC
genomic: ACTTCGAGACGGTGGATACTCTGATGACATGACTCTTGCAGCAATTGCTGgtaatgcttt ... gtctttacagGGAATCATAAGAGGCTGATTACATCTCCGCCAGTTGCCGTCTTTCCTCACC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGCATGCGGATGATTTCAGAAATGATAATTATGGAGTGGTTTCGGGACTTCGAGACGGTGGATACTCTGATGACATGACTCTTGCAGCAATTGCTGgtaatgctttgatctaccttattttctttgtcacatttattgaaccagtttatctgtggacctttatttctgcctgtttgatgttatgtgtttgaccaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA