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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTTGAGGAGGCCCAACGTGCTATTAATGCAGCACATGTTGAATCTGAAAGTATCGAGAATTGTATTGGTGTTGTCAAGTTAATGGGTCGCTACAGCGgtaagtttcatgtctttattgtccatatgttcatctgcctcacttcttttaaggtagtcttcatgtcaacagctcttctattctgagaatgcatggagga...

Basic information

species Vitis vinifera
transcript Vv11s0016g02850.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA07G15170.4 (Glycine max), 5'ss of exon 9
GCTGTTGAGGAGGCCCAACGTGCTATTAATGCAGCACATGTTGAATCTGAAAGTATCGAGAATTGTATTGGTGTTGTCAAGTTAATGGGTCGCTACAGCGgtaagtttcatg--tctttattgtccatatgttcatctgcctcacttcttttaaggtagtcttcatgtcaacagctcttctattctgagaa-tgcatggagga
|||||||||||||| ||||| ||||| |||||||||||||||||| |||||||| | || ||| | || |||||||||||||| |||||| |  ||||||||||||||| |   |  |||   | | |    |||   || | |     || ||  |    ||    |||| |||      ||  |||||| | ||   |   
GCTGTTGAGGAGGCTCAACGAGCTATAAATGCAGCACATGTTGAAGCTGAAAGTGTTGAAAATGGCATAGGTGTTGTCAAGTTGATGGGTAGAAACAGCGgtaagtttcctaaatgcttaaaatgcttccactcactggcttaaggg--ttcaatttttaattaccttcaatagcctaagaataatgagaagttcacacatc-

upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA01G00870.1 (Glycine max), 5'ss of exon 9
GCTGTTGAGGAGGCCCAACGTGCTATTAATGCAGCACATGTTGAATCTGAAAGTATCGAGAATTGTATTGGTGTTGTCAAGTTAATGGGTCGCTACAGCGgtaagtttcatg--tctttattgtccatatgttcatctgcctcacttcttttaaggtagtcttcatgtcaacagctcttctattctgagaa-tgcatggagga
|||||||||||||| ||||| ||||| |||||||||||||||||| |||||||| | || ||| | || |||||||||||||| |||||| |  ||||||||||||||| |   |  ||||  | | |    ||| ||| || |    ||  |   |   ||   | ||||||||      ||  |||||| |  ||      
GCTGTTGAGGAGGCTCAACGAGCTATAAATGCAGCACATGTTGAAGCTGAAAGTGTAGAAAATGGCATAGGTGTTGTCAAGTTGATGGGTAGAAACAGCGgtaagtttcctaaatgcttataatgcttccactca-ctggcttaagggttcaatttttaactatct-tcaacagcctaagaataatgagaagtttatatctt-

upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G03570.1 (Glycine max), 5'ss of exon 9
GCTGTTGAGGAGGCCCAACGTGCTATTAATGCAGCACATGTTGAATCTGAAAGTATCGAGAATTGTATTGGTGTTGTCAAGTTAATGGGTCGCTACAGCGgtaagtttc----atgtctttattgtccatat-gttcatctgcctcacttcttttaa--ggtagtct-tcatgtcaacagctcttctattc--tgagaatgcatggagga---------
|||||||||||||| ||||||||||| |||||||||||||||||  ||||||||   || ||| | || |||||||| || || ||||| || ||||| ||||||||||    ||| ||  | ||  || ||   ||||  || ||   |  || ||    |    | | |||| || |  |  | |  ||  ||  | |  ||||| |          
GCTGTTGAGGAGGCTCAACGTGCTATAAATGCAGCACATGTTGAGGCTGAAAGTGGTGAAAATGGCATAGGTGTTGTTAAATTGATGGGCCGGTACAGTGgtaagtttcttgaatgcctccactgatcagattaatcattagcatcctgtacttcaaccaatgacatattatgttaataaattattttctcgatgtaattatatggatgcatggtgcag

upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA05G36050.1 (Glycine max), 5'ss of exon 9
GCTGTTGAGGAGGCCCAACGTGCTATTAATGCAGCACATGTTGAATCTGAAAGTATCGAGAATTGTATTGGTGTTGTCAAGTTAATGGGTCGCTACAGCGgtaagtttc----atgtctttattgtccatat-gttcatctgcctcacttcttttaaggtagtcttcatgtcaacagctcttctattctgagaatgcatggagga-
|||||||||||||| ||||||||||| |||||||||||||||||  ||||||||   || ||| | || |||||||| || || ||||| || ||||| ||||||||||    ||| ||  | ||  || ||   ||||  || ||   |  || |  |   | || |||| ||    | |  |  |    |  ||||||| | | 
GCTGTTGAGGAGGCTCAACGTGCTATAAATGCAGCACATGTTGAGGCTGAAAGTGGTGAAAATGGCATAGGTGTTGTTAAATTGATGGGCCGGTACAGTGgtaagtttcttgaatgcctccactgatcagattaatcattagcatcctgtacttcattgacatatt-atgttaattattttcttgatacatgg-tgcatggtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|46918678|gb|CN548007.1|CN548007
EST:     GTCAAGTTAATGGGTCGCTACAGCG                         GGTTTATTGCAATGCATGCTACCCTGGCCAGCCGAGATGTGGACTGTTGCT
genomic: GTCAAGTTAATGGGTCGCTACAGCGgtaagtttca ... tgtggtgcagGGTTTATTGCAATGCATGCTACCCTGGCCAGCCGAGATGTGGACTGTTGCT
EST: gi|161717475|gb|FC066878.1|FC066878
EST:     AAGTATCGAGAATTGTATTGGTGTTGTCAAGTTAATGGGTCGCTACAGCG                         GGTTTATTGCAATGCATGCTACCCTGGCCAGCCGAGATGTGGACTGTTGCT
genomic: AAGTATCGAGAATTGTATTGGTGTTGTCAAGTTAATGGGTCGCTACAGCGgtaagtttca ... tgtggtgcagGGTTTATTGCAATGCATGCTACCCTGGCCAGCCGAGATGTGGACTGTTGCT
EST: gi|29784840|gb|CB341314.2|CB341314
EST:     AAGTATCGAGAATTGTATTGGTGTTGTCAAGTTAATGGGTCGCTACAGCG                         GGTTTATTGCAATGCATGCTACCCTGGCCAGCCGAGATGTGGACTGTTGCT
genomic: AAGTATCGAGAATTGTATTGGTGTTGTCAAGTTAATGGGTCGCTACAGCGgtaagtttca ... tgtggtgcagGGTTTATTGCAATGCATGCTACCCTGGCCAGCCGAGATGTGGACTGTTGCT
EST: gi|27584897|gb|CB007592.1|CB007592
EST:     AAGTATCGAGAATTGTATTGGTGTTGTCAAGTTAATGGGTCGCTACAGCG                         GGTTTATTGCAATGCATGCTACCCTGGCCAGCCGAGATGTGGACTGTTGCT
genomic: AAGTATCGAGAATTGTATTGGTGTTGTCAAGTTAATGGGTCGCTACAGCGgtaagtttca ... tgtggtgcagGGTTTATTGCAATGCATGCTACCCTGGCCAGCCGAGATGTGGACTGTTGCT