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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATCTTGTGGGAATGTTTGTGGAATTGTTTACTGCCTTGAGCGTACTACTTGTGATGAATTGTCTGCTCATCTATCAAAAAATGGCATCTCTTCTGCTGgtgattcactgaaattttcttttacctgctaaaacttttatttgcgatggattcaagtaaacatgttttcttgttccggtgctttttgaag

Basic information

species Vitis vinifera
transcript Vv11s0016g00850.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g00850.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT4G35740.1 (Arabidopsis thaliana), 5'ss of exon 9
AAATCTTGTGGGAATGTTTGTGGAATTGTTTACTGCCTTGAGCGTACTACTTGTGATGAATTGTCTGCTCATCTATCAAAAAATGGCATCTCTTCTGCTGgtga--ttcactgaaattttcttttacctgctaaaacttttatttgcgatggattcaagtaaacatgttttcttgttccggtgctttttgaag
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AAGTCATGTGGAAATATTTGTGCAATTATCTATTGCCTTGAGCGTACAACCTGTGATGACTTGTCTGTTCATCTTTCCAGTATTGGGATTTCTTCTGCGGgtaaaaattcgtcccatctacctctatctgcttcaatattga---gtga------caagcgctgacatttacttatccatatatatgcag---