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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCTACCAGTTTTTATTCTCCAAACATGAATGTTGGCAATGAGAACTTTCTACCTCTGCTTAAACGGCTTGATGAGTGCATATCgtaagtgtatttttttaaattagtcctttgtggataatctatggttctgagctagcttttttaaccatgctgattattaatgataccgacaatcactggcttttatgagaatacagtttctgtagtttgaaaaattttccttatctttattttttttaccatgcttag

Basic information

species Vitis vinifera
transcript Vv11s0016g00350.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g00350.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA17G04990.1 (Glycine max), 5'ss of exon 8
GTTGCTACCAGTTTTTATTCTCCAAACATGAATGTTGGCAATGAGAACTTTCTACCTCTGCTTAAACGGCTTGATGAGTGCATATCgtaagtgtattt----ttttaaattagtcctttgtggataatctatggttctgagctagcttttttaaccatgctgattattaatgataccgacaatcactggcttttatgagaatacagtttctgtagtttgaaaaattttccttatctttattttttttaccatgcttag
|||||||||| ||||||||||||||||||||| ||||| ||||| |||||||| || || || ||||| |||||||| ||||| |||| |||  |  |    ||| |   |||| ||| ||    | | | |  | ||     ||  | |  ||     |  |  |||  | |    | |  |  |||  || ||   |||  || |   |||  |     | |||||   | | || ||||                
GTTGCTACCAATTTTTATTCTCCAAACATGAACGTTGGAAATGAAAACTTTCTTCCACTTCTCAAACGACTTGATGAATGCATCTCgtgagtaaaaatccagtttcattctagtacttcgta---actttgtcatgct----cagtgtatagaatgtcacaaacgatt--taacgttggctttatctgctttgtagttgaa--caataaatgtgatcatttacattttttatcttttaatttag--------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122689568|gb|EC941180.1|EC941180
EST:     GGCAATGAGAACTTTCTACCTCTGCTTAAACGGCTTGATGAGTGCATATC                         GTATGTTGAGAGCAATCCACAGTATGCAGAATCAAGTGTTTACTTGGTCAA
genomic: GGCAATGAGAACTTTCTACCTCTGCTTAAACGGCTTGATGAGTGCATATCgtaagtgtat ... ccatgcttagGTATGTTGAGAGCAATCCACAGTATGCAGAATCAAGTGTTTACTTGGTCAA