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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGCCAGGAATGCAAGACTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacactatctttttattatcttttatctagtttaatttctcaatctccagattacttcacatggctgctcaaacatgttccacattacgttttcataactggggaggtgttactggcgttaattgtttccagaatatgtctaatgtacttctataattaactgactacatcttttggattttgtattttacag

Basic information

species Vitis vinifera
transcript Vv10s0116g01210.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA07G39240.1 (Glycine max), 5'ss of exon 9
GATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGCCAGGAATGCAAGACTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacactatctttttattatctttt--atctagtttaatttctcaatctccagattacttcacatggctgctcaaacatgttccacat-tacgttttcataactggggaggtgttactggcgttaattgtttccagaatatgtctaatgtacttctataattaactgactacatcttttggattttgtattttacag
|||||| ||||| ||||||||  | |||||| | ||||| |||||||||||||| |||||| |||||||  |||||||  ||||||| ||||| || || ||||  || || | |   || |  |       || |||  ||| | |   ||  |  ||     ||||  ||       |||||  | |  |  | |||  | ||| |  |  | |||                                                                                 
GATAAACCATGCAATTGGAGCATCTGGAGTTATGAGCCAAGAATGCAAGACTGTTGTTGCAGAGTATGGACAAACAATATTGGATTTGCTTTTGTCTGAAgtgagtaccatttgtaatttgttctccccgcatattttggtttattagattcttgcctatgat-catgagtg----ggtatgtttgaaagatctgattttttcacttgacaccttttag--------------------------------------------------------------------------------

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA07G39240.2 (Glycine max), 5'ss of exon 9
GATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGCCAGGAATGCAAGACTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacactatctttttattatcttt--tatctagtttaatttctcaatctccagattacttcacatggctgctcaaacatgttccacat-tacgttttcataactggggaggtgttactggcgttaattgtttccagaatatgtctaatgtacttctataattaactgactacatcttttggattttgtattttacag
|||||| ||||| ||||||||  | |||||| | ||||| |||||||||||||| |||||| |||||||  |||||||  ||||||| ||||| || || ||||  || || | |   || |  |       || |||  ||| | |   ||  |  ||     ||||  ||       |||||  | |  |  | |||  | ||| |  |  | |||    |                                                                            
GATAAACCATGCAATTGGAGCATCTGGAGTTATGAGCCAAGAATGCAAGACTGTTGTTGCAGAGTATGGACAAACAATATTGGATTTGCTTTTGTCTGAAgtgagtaccatttgtaatttgttctccccgcatattttggtttattagattcttgcctatgat-catgagtg----ggtatgtttgaaagatctgattttttcacttgacaccttttagacacag--------------------------------------------------------------------------

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G62290.2 (Arabidopsis thaliana), 5'ss of exon 8
GATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGCCAGGAATGCAAGACTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacactatctttttattatcttttatctagtttaatttctcaatctccagattacttcacatggctgctcaaacatgttccacattacgttttcataactggggaggtgttactggcgttaattgtttccagaatatgtctaatgtacttctataattaactgactacatcttttggattttgtattttacag
||||||| | || ||||||||  | ||||||||||||||| | ||||||||||| ||||  ||||||||  |||| ||  |||||||||||||  | ||||| |  |   | ||  ||| || |  ||  |  |  |       |     || ||    |    |   ||||   | |||   | | ||   || |   |                                                                                                
GATAAATAAGGCTATTGGAGCATCTGGAGTTGTTAGCCAGCAGTGCAAGACTGTTGTTGACCAGTATGGACAAACCATTTTGGATTTACTTTTGGCTGAGgtaagaatattgttaatat-atatgatacttgatacagaacgcaatgaatcatatatgcttttttttttgct-gtatatgcaactcttttgcttcttccag-----------------------------------------------------------------------------------------------

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G11910.1 (Arabidopsis thaliana), 5'ss of exon 9
GATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGCCAGGAATGCAAGACTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacactatctttttattatcttttatctagtttaatttctcaatctccagattacttcacatggctgctcaaacatgttccacattacgttttcataactggggaggtgttactggcgttaattgtttccagaatatgtctaatgtacttctataattaactgactacatcttttggattttgtattttacag
|||||| ||||| ||||||||  | ||||||||||||||| | ||||||||||| || |  || || ||| | || ||  ||||||||||||| || ||||| |       |||  ||||    |  | ||| |  ||| | | |     || ||  ||   ||    |  |    | |      |||  |  || |     ||  |                                                                                         
GATAAACCATGCTATTGGAGCAGCTGGAGTTGTTAGCCAGCAGTGCAAGACTGTTGTGGATCAATACGGGCAGACCATTTTGGATTTACTTTTGTCTGAGgttagtgtg--cttaatattggact--agctaataaaatctgtgacaagtcatat-gctgtgca-aattattttggcttaccattcatcccccttgcgcc-ttgcag-----------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77577410|gb|DV217422.1|DV217422
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|352794761|gb|FQ475259.1|FQ475259
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTTGAAGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTT-GATGG
EST: gi|30300182|gb|CB976976.1|CB976976
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|32247021|gb|CD712840.1|CD712840
EST:     CTGTAGTTGCACAGTATGGCAAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|27579600|gb|CB002295.1|CB002295
EST:     CTGTAGTTGCACAGTATGGGCAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|26266741|gb|CA817804.1|CA817804
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|71881802|gb|DT030857.1|DT030857
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|110395600|gb|EC961267.1|EC961267
EST:     CAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|30251118|gb|CB968851.1|CB968851
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|110718432|gb|EE095257.1|EE095257
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|34549541|gb|CF517773.1|CF517773
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|33402264|gb|CF207891.1|CF207891
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|161719906|gb|FC066714.1|FC066714
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|110701137|gb|EE078403.1|EE078403
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|30326639|gb|CD009901.1|CD009901
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|110692890|gb|EE068644.1|EE068644
EST:     CTGTAGTTGCACAGTATGGGCAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|26264648|gb|CA815711.1|CA815711
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|71890243|gb|DT039298.1|DT039298
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCA-ATGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACA-GAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGG
EST: gi|34550114|gb|CF518332.1|CF518332
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|110724332|gb|EE100065.1|EE100065
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|27583889|gb|CB006584.1|CB006584
EST:     CTGTAGTTGCACAGTATGGGCAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|32269157|gb|CD718316.1|CD718316
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|34542385|gb|CF510617.1|CF510617
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|110387693|gb|EC952381.1|EC952381
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|46918171|gb|CN547500.1|CN547500
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|71889630|gb|DT038685.1|DT038685
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|110724931|gb|EE101189.1|EE101189
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|26265277|gb|CA816340.1|CA816340
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|110716609|gb|EE091739.1|EE091739
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|30253215|gb|CB970766.1|CB970766
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|110723066|gb|EE099952.1|EE099952
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|34549014|gb|CF517246.1|CF517246
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|87584007|gb|DY473330.1|DY473330
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|27585499|gb|CB008194.1|CB008194
EST:     CTGTAGTTGCACAGTATGGGCAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|71884619|gb|DT033674.1|DT033674
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|77589411|gb|DV223973.1|DV223973
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|30300771|gb|CB977565.1|CB977565
EST:     CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
EST: gi|110684973|gb|EE062864.1|EE062864
EST:     CTGTAGTTGCACAGTATGGGCAAACAATCATGGATTTACTTTTATCAGAG                         GCATCACCACAGAAAATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG
genomic: CTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacacta ... tattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGCCAGGAATGCAAGACTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacactatctttttattatcttttatctagtttaatttctcaatctccagattacttcacatggctgctcaaacatgttccacattacgttttcataactggggaggtgttactggcgttaattgtttccagaatatgtctaatgtacttctataattaactgactacatcttttggattttgtattttacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA