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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGACATCCTTTCAAATGGAGGACTAGTTCAAGAGATGGCACACATAGCTAATGGCCGGGATCCAGGCAACTGTGTCTCTCTACTTCGAGTGAATgtaagttccatatgcctgccgtgtcaatgtcgatgatcaaatcataatcatatatctgaaactgtcactgtgcgactaaactaaagtgtgaacttcaaaataaactgtag

Basic information

species Vitis vinifera
transcript Vv10s0116g00680.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g00680.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA01G45070.1 (Glycine max), 5'ss of exon 9
TGGGACATCCTTTCAAATGGAGGACTAGTTCAAGAGATGGCACACATAGCTAATGGCCGGGATCCAGGCAACTGTGTCTCTCTACTTCGAGTGAATgtaagttccatatgcctgccgtgtcaatgtcgatgatcaaatcataatcatatatctgaaactgt-cactgtgcgac-taaactaaagtgtgaacttcaaaataaactgtag-------------
|||||||| || || || || || |||||||||||  ||||||| ||||| ||||| || ||||| ||||||||||||||| |||||||||| ||||||||||||   ||  | |    |   || |    ||  |   |||   |||||| |  |  | |  |   ||  || ||||    |   || | ||    | | ||  ||              
TGGGACATTCTCTCCAACGGGGGTCTAGTTCAAGAATTGGCACATATAGCAAATGGTCGTGATCCCGGCAACTGTGTCTCTTTACTTCGAGTCAATgtaagttcctgctgtgtacttaatttttggcatgcatgtatgtatatatatatatatatatatatatatcatgacacataaagctgaccctgtattttggtaaatacc-taccttgtgtgcgtag

upper sequence: Vv10s0116g00680.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA11G00570.1 (Glycine max), 5'ss of exon 9
TGGGACATCCTTTCAAATGGAGGACTAGTTCAAGAGATGGCACACATAGCTAATGGCCGGGATCCAGGCAACTGTGTCTCTCTACTTCGAGTGAATgtaagttccatatgcctgccgtgtcaatgtcgatgatcaaatcataatcatatatctga-aactgtcac-tgtgcgactaaactaaagtgtgaacttcaaaataaactgtag
|||||||| || || || || || |||||||||||  | ||||| ||||| ||||| || ||||| ||||||||||||||| |||||||||| ||||||||||||       |||  | |  ||||   | || || |  |   |||| |||| |  || | ||| | |  |   |||     ||||                     
TGGGACATTCTATCCAACGGGGGTCTAGTTCAAGAATTAGCACATATAGCAAATGGTCGTGATCCCGGCAACTGTGTCTCTTTACTTCGAGTCAATgtaagttcc-------tgctatat--atgtatgtaattaa-ttgttggcataaatctcatgacgggcacatatttggtaaaaaccttgtgtag-------------------

upper sequence: Vv10s0116g00680.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: EFJ19972 (Selaginella moellendorffii), 5'ss of exon 10
TGGGACATCCTTTCAAATGGAGGACTAGTTCAAGAGATGGCACACATAGCTAATGGCCGGGATCCAGGCAACTGTGTCTCTCTACTTCGAGTGAATgtaag-ttccatatgcctgccg--tgtcaatgtcgatgatcaaatcataatcatatatctgaaactgtcactgtgcgactaaactaaagtgtgaacttcaaaataaactgtag
|||||||| || || || || ||| | || ||||||||||| ||||| || || || | ||||||||||||| |||||||||| || || || || ||||| || | |    ||  ||    || || || |  |   || | |  || | | |||    |                                                
TGGGACATTCTCTCCAACGGTGGAATGGTGCAAGAGATGGCTCACATCGCCAAAGGACAGGATCCAGGCAACAGTGTCTCTCTTCTCCGTGTCAACgtaagctttcttggagctttcgatcttcgatctctagaactgaagcttcttcctgtctctctttccag---------------------------------------------

upper sequence: Vv10s0116g00680.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: EFJ10492 (Selaginella moellendorffii), 5'ss of exon 10
TGGGACATCCTTTCAAATGGAGGACTAGTTCAAGAGATGGCACACATAGCTAATGGCCGGGATCCAGGCAACTGTGTCTCTCTACTTCGAGTGAATgtaag-ttccatatgcctgccg--tgtcaatgtcgatgatcaaatcataatcatatatctgaaactgtcactgtgcgactaaactaaagtgtgaacttcaaaataaactgtag
|||||||| || || || || ||| | || ||||||||||| ||||| || || || | ||||||||||||| |||||||||| || || || || ||||| || | |    ||  ||    || || || |  |   || | || || | | |||    |                                                
TGGGACATTCTCTCCAACGGTGGAATGGTGCAAGAGATGGCTCACATCGCCAAAGGACAGGATCCAGGCAACAGTGTCTCTCTCCTCCGTGTCAACgtaagctttcttggagctttcgatcttcgatctctagaactgaaacttattcctgtctctctttccag---------------------------------------------